Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01586 ATGCGTGGGGAAGATCAGGAAGAGGAACATCATCAGCAACAACAGGAGTGTTCACAAACAATTGAGAATATGTTTCAACAACAGCTTCTTCTCCACCAACACCTACAAAACAACGACGACGACGACAACAACAACGGAGACCATCATCATGGAACTGGAAGAGGGTTAATTTTTCCACCCGAACTCGTGTCGCCGGTTCTCCAGCCGTGGTCGTCGCTTAACCCTTTTATGATCCCTCCCCCACCATCGTTGCCATGTTCATCATCATCATCCTATGGTGGTTTGTTTAACCGGAGACCACCTAATTGTGTTCAGTTTGCTTATGATGGTTCCTCTTCCGCGGACCACCTAGGTCAGATCATATCCACCACGCTTGGACCCGTGGTTCATCCTGGCTCCATGGCTCCCTTTGGGCTACAAGCTGAGCTTGGTAAAATGAGTGCGCAAGAAATTATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGGAGAAGAGAAAGAATCAACAACCATCTGGCTAAGCTCAGGAGCTTACTCCCTAATACCACTAAAACGGACAAAGCTTCACTACTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAACGACAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGGTAACAGTGGACGATGCCTCAGAGGAGATGATGATAAGTGGAGCCAAATTTGTAATAAAGGCTTCCCTTTGCTGCGAGGACCGCTCTGATCTCCTCCCTGACCTCATCAAAGCCCTGAAATCCTTGCGTTTAAGAACCCTCAAAGCTGAAATCACGACGCTTGGTGGGCGTGTAAGAAATGTGTTGTTTATCACTGCTGAAGAAGAGCAACAACACGGTCCCGAACAGCAACACAATATGAGCTCTATTCAAGAAGCACTCAAAGCTGTGATGGAAAGAACAGGAGGGGATGATTCTTCTTCAGCAAATATCAAAAGACTAAGGACCACAAATAACATCAATATCCTTTGA 1029 45.87 MRGEDQEEEHHQQQQECSQTIENMFQQQLLLHQHLQNNDDDDNNNGDHHHGTGRGLIFPPELVSPVLQPWSSLNPFMIPPPPSLPCSSSSSYGGLFNRRPPNCVQFAYDGSSSADHLGQIISTTLGPVVHPGSMAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDEVTVDDASEEMMISGAKFVIKASLCCEDRSDLLPDLIKALKSLRLRTLKAEITTLGGRVRNVLFITAEEEQQHGPEQQHNMSSIQEALKAVMERTGGDDSSSANIKRLRTTNNINIL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9186384 9188831 - Carg01814-RA Car04g01586 147011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01586 342 SMART finulus 164 213 IPR011598 GO:0046983
Car04g01586 342 MobiDBLite consensus disorder prediction 36 57 - -
Car04g01586 342 PANTHER TRANSCRIPTION FACTOR BHLH30 64 340 - -
Car04g01586 342 Gene3D - 153 214 IPR036638 GO:0046983
Car04g01586 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 213 IPR036638 GO:0046983
Car04g01586 342 Pfam Helix-loop-helix DNA-binding domain 161 207 IPR011598 GO:0046983
Car04g01586 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Car04g01586 342 CDD bHLH_AtAIG1_like 153 230 - -
Car04g01586 342 PANTHER TRANSCRIPTION FACTOR BHLH30 64 340 IPR045847 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01586 Car18g00972 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01586 Car-Chr4:9186384 Car06g00735 Car-Chr6:4866289 3.07E-51 dispersed
Car05g00495 Car-Chr5:2869149 Car04g01586 Car-Chr4:9186384 5.69E-34 transposed
Car18g00972 Car-Chr18:10270636 Car04g01586 Car-Chr4:9186384 4.77E-160 wgd
Car04g01586 Car-Chr4:9186384 Car04g01966 Car-Chr4:13795642 4.39E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3375 PF00010 HLH 2.30E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01586 - - csv:101214615 427.557