Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01590 ATGGTACTCAGGCTAGGGCTTTTGGTTGCTGCTTCAGTTGCAGCCTATGCAGTAAGGCAGCTCAATGTTAAAAACTCAAACTCAGTCGCCTCGGTCGACAAGCTCACCGAAAATGGTGAAGAGAAGGAGGAGGTTAAACATTCTAACCATGGCTTCAAAGATGATTATGGGGAAGAAGAGGAGGAAGAAGAAGTCAAGTTAATTAGTAGCGTATTCGATCAAGTTCCTGTTTATATAACTGAAGATGAAGAGATTTTACCTGAATTTGAAGACCTTCTTTCTGGGGAGATTGAATTTCCATTACCTGAAATTGATGACAATAAAGCTGGTAAGGATAGAGCCTATGAAACTGAGATGGCAAACAATGCGAGTGAACTCGAGCGATTGCGCAGCTTAGTAAAGGAATTGGAGGAGAGGGAAGTAAAGCTTGAAGGCGAATTGCTCGAATACTATGGATTGAAAGAACAGGAATCCGACGTTACAGAGTTACAGAGACAGCTCAAGATCAAGACAGTAGAGATTGATATGCTTAATATTACCATTAGCTCTTTTCAGGCTGAAAGGAAGAAGCTTCAAGAAGAGATTGCACAAGCTGCTACAGTGAAGAAGGAGTTGGAATTTGCAAGGAACAAGATCAAAGAGTTGCAGAGGCAGATACAGCTTGATGCTAACCAAACAAAAGGGCAGCTATTATTACTCAAGCAACAAGTTTCTGGTCTACAGGCAAAGGAGCAGGAAACTATAAAAAAGGATGCTGAAATAGAAAAGAAGTTGAAAGCTGTGAAGGAATTGGAGGTTGAAGTTATGGAACTTAAGCGGAAGAACAAAGAGCTTCAAATCGAAAAGCGGGAGCTGACTATTAAACTAGATGCTGCTGAAAATAGAATCTCGACCCTGTCGAACATGACAGAGAGTGAAATGGTATCCCAGACTAGAGAGGAAGTCAACAATTTAAGGCATACAAATGAGGACTTAATAAAGCAAGTTGAAGGACTTCAGATGAATAGGTTCAGTGAAGTTGAAGAGTTGGTGTACCTTCGATGGGTCAATGCATGCTTGAGATATGAACTTCGCAATTACCAAGCTCCTACAGGAAAAGTATCAGCTCGTGATCTTAACAAGAATTTGAGCCCAAAATCTCAGGAGAAGGCTAAACAACTCATGTTGGAGTACGCAGGATCGGAACGTGGACAAGGAGACACAGATCTCGAAAGCAACTTCTCTCAACCATCTTCTCCTGGAAGTGAGGATTTTGACAATGCTTCAATTGATAGTTCTTTCAGTAGATATAGTAGCCTCAGTAAGAAACCTAGCTTGATCCAGAAGTTGAAGAAATGGGGTGGTAGAAGCAAAGATGATTCTAGTGTCGTTTCTTCACCAGCCAGATCCTTTTCCGGTGGTTCTCCGAGCAGGATGAGCATGAGTCAGAAGCCAAGAGGTCCATTAGAAGCATTGATGCTTAGAAATACAAGTGATAGTGTTGCAATCACCTCGTTCGGTACGATGGAACAGGAAGTTCCCGACTCTCCGGGCACTCCGAATCTCCCAAGTATCAGAACACAGACTCCTAACGACTCCTTGAATTCGGTTGCATCATCATTCCAACTTATGTCTAAATCTGTTGGAGGAGTGTTAGATGAGAAATATCCAGCATACAAAGATCGACATAAGTTGGCATTAGCAAGAGAGAAGCAAATTAAGGAAAGGGCTGATCAGGCAAGAGCAGAGAGGTTTGGCAATATTTCAAATTCAAATTTGAACCCTGAATTTAAAGGCAAGACTGAGAGAGACAGACCTGTTGTTTTGCCGCCAAAACTTTCTCAAATAAAGGAAAAACCAGTTGTATCTAGTGATGCTGCTGATGTATCAGGTGAAAATAAGAAGATTGAATCTTCAGCTATCAGCAGGATGAAGCTAGCAGAGATTGAGAAGCGTCCTCCACGGGTACCTAAGCCACCACCAAAACCATCGGCAGGTGCTTCGGTAAGCACGAATCCCAATCCTCGGGGTGGTGTACCAGCTGCTCCACCTCTTCCACCTCCACCACCTGGTGCCCCACCACCTCCTCCGACCGGTGGACCACCTCGTCCACCTCCTCCTCCAGGGAGCTTAGCCAAAGGTGTAGGTGGTGATAAGGTTCATAGAGCTCCTGAGTTAGTCGAATTCTATCAGTCACTGATGAAACGAGAAGCAAAGAAGGATACTCCTTTGCTTTCTTCTACATCATCTAATGTATCTGATGCTAGAAGCAACATGATTGGAGAGATTGAAAACAGATCATCATTCCTCATAGCGGTAAAAGCAGACGTGGAAACTCAAGGTGATTTTGTTATATCATTGGCGGCTGAAGTTCGAGCAGCTACATTCTCTAATATAGAGGATGTCGTGGCGTTCGTAAATTGGTTAGATGAAGAGCTATCGTTCTTGGTCGATGAAAGGGCAGTTCTGAAGCACTTCGATTGGCCAGAAGGAAAAGCGGATGCTTTGAGAGAGGCGTCTTTCGAGTATCAGGACCTAATGAAGTTGGAGAAGCGGGTCACCACGTTTGTTGATGAACCTAAACTCCCATGTGAAGCAGCTTTGAAGAAAATGTACTCCTTGCTTGAGAAGGTTGAGCAGAGTGTCTACGCGCTTCTACGCACAAGAGACATGGCTATCTCGCGGTATAGAGAGTTCGGAATTCCAGTTGATTGGTTGTCTGATACAGGAGTTGTTGGAAAGATCAAGCTCTCATCCGTACAATTAGCAAGAAAATACATGAAGCGTGTAGCATCAGAACTAGATGCAATGAGTGAACCAGAGAAGGAGCCAAACAGAGAGTTTTTGGTCTTACAAGGCGTCCGTTTTGCTTTCCGTGTTCATCAGTTTGCAGGAGGCTTCGACGCCGAGAGCATGAAGGCTTTTGAAGAGTTGAGGAGCCGAGTTCATACAACACAGATAGGAGATGACAATAAGCAAGAAGCCTGA 2967 43.71 MVLRLGLLVAASVAAYAVRQLNVKNSNSVASVDKLTENGEEKEEVKHSNHGFKDDYGEEEEEEEVKLISSVFDQVPVYITEDEEILPEFEDLLSGEIEFPLPEIDDNKAGKDRAYETEMANNASELERLRSLVKELEEREVKLEGELLEYYGLKEQESDVTELQRQLKIKTVEIDMLNITISSFQAERKKLQEEIAQAATVKKELEFARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEQETIKKDAEIEKKLKAVKELEVEVMELKRKNKELQIEKRELTIKLDAAENRISTLSNMTESEMVSQTREEVNNLRHTNEDLIKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPTGKVSARDLNKNLSPKSQEKAKQLMLEYAGSERGQGDTDLESNFSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSVVSSPARSFSGGSPSRMSMSQKPRGPLEALMLRNTSDSVAITSFGTMEQEVPDSPGTPNLPSIRTQTPNDSLNSVASSFQLMSKSVGGVLDEKYPAYKDRHKLALAREKQIKERADQARAERFGNISNSNLNPEFKGKTERDRPVVLPPKLSQIKEKPVVSSDAADVSGENKKIESSAISRMKLAEIEKRPPRVPKPPPKPSAGASVSTNPNPRGGVPAAPPLPPPPPGAPPPPPTGGPPRPPPPPGSLAKGVGGDKVHRAPELVEFYQSLMKREAKKDTPLLSSTSSNVSDARSNMIGEIENRSSFLIAVKADVETQGDFVISLAAEVRAATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASFEYQDLMKLEKRVTTFVDEPKLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLSDTGVVGKIKLSSVQLARKYMKRVASELDAMSEPEKEPNREFLVLQGVRFAFRVHQFAGGFDAESMKAFEELRSRVHTTQIGDDNKQEA 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9206897 9212585 - Carg01810-RA Car04g01590 147015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01590 988 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 986 IPR040265 -
Car04g01590 988 MobiDBLite consensus disorder prediction 36 57 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 443 479 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 571 710 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 452 475 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 399 421 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 36 55 - -
Car04g01590 988 Coils Coil 308 335 - -
Car04g01590 988 Coils Coil 119 146 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 670 704 - -
Car04g01590 988 Coils Coil 153 225 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 395 421 - -
Car04g01590 988 Coils Coil 254 302 - -
Car04g01590 988 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 986 - -
Car04g01590 988 MobiDBLite consensus disorder prediction 631 650 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01590 - - - csv:101205484 1578.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01590 Car15g01280 CCT
Car04g01590 Car15g01280 ECH
Car04g01590 Car18g00975 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01590 Car-Chr4:9206897 Car07g00162 Car-Chr7:959792 3.53E-95 dispersed
Car08g00632 Car-Chr8:4045387 Car04g01590 Car-Chr4:9206897 1.15E-61 transposed
Car15g01280 Car-Chr15:9995576 Car04g01590 Car-Chr4:9206897 1.82E-42 wgd
Car18g00975 Car-Chr18:10289726 Car04g01590 Car-Chr4:9206897 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008211 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01590 Car_Chr04 FPKM 9.156863 10.257208 13.657683 11.354226 7.748947 5.774703 6.557488 0.756159 0.700614 0.825375