Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01598 ATGAGTTCCTCCAAGCACCAAGAACATAACAATGGCGACTCCCCTTCGAGTTCGAAGCCGGCCAATCCCATTTTGCCACAATTGCTGCAATCCATCACTCTCAAGTTCGAAGATGTGGAGTATAGCGTCAAGTTGAGGAGCCCAAAAGCCACATGCTTTGGTTCAAACGGTGCACCCATTACGCGGACCATTCTGAATGGCGCAACCGGAATGGTCCGGCCGGGAGAGGTTCTGGCAATGCTTGGCCCATCTGGCAGCGGCAAGACCACCCTCCTTACCGCCCTTGCTGGCCGTCTTTCGGGAAATATCACCGGCAACATAACCTACAATGGCAACCCATTTTGTGGCTCCATCAAACGCAACATTGGGTTTGTCCCACAGGACGACTTGTTCTATGCTCACTTGACAGTGGTGGAAACTCTGACTTATGCAGCTATGTTAAGGCTTCCCAGAACGCTTACGAAGGCAGAGAAATTGGAGCAGGTTGAAATGGTAATCAACGAGATGGGTTTGTCGAAATGCCGGAATGTTTGGATTGGGAGTCCTCTGTTACGGGGAATTTCTGGTGGGGAACGAAAACGGGTTAGTATTGGACATGAGATTATAATGAACCCGAGTGTTGTAATGCTGGATGAGCCCACTTCAGGGCTTGACTCTACCACGGCTGAGCGCATTGCTGGGACGTTGCGGCGACTGGCTCGAGGCGGTCGGACGGTGGTGATGACAATCCATCAGCCGTCGGCTAGAATCTATGCGATGCTTGATAAGGTGCTGGTCATGTCGGAGGGATCGTCCATATACTCGGGGGATGCCGGTCGAGTCGTTGAGTATTTCGCGTCCATTGGATATGGTGCTCATGGGGGGCTCAACTTTGTGAATCCTGCTGATTTTCTTCTTGATCTTGCTAATGGCATTGCATTTGCATCTGATACAAAAGAAGATGATACCCAACAGGGGGAGTTTCCTGAGGATCGTCAAACAGCAATCAAGCAATCTCTGATATCCATTTACAGAACCAACTTATACCCATCATTGAAGGCCGAGATTCAAGCGGAGCCTCAATCGGAATCACCTCCATTATTCACCAGCCAACAAGAACGATGGGCGTGTAGCTGGTGGGATCAATTTGTGGTGTTGCTAAGTAGAGGGTTAAAAGAAAGGAAACATGAATCCTACTCTGGCTCAAGGATTTTCCATACCATGTCAATCTCAATCATTGCAGGTATTCTCTGGTGGCGATCGAGCATCTCAAACCTTCAAGATCAGGTTGGACTCCTATTCATCTTCGCCGTTAACTCGAGCATTCTTGCTATTTACATGGCGGTTTTCGAGTTCCCAAAAGAGCAATCGATTCTCAACAAAGAGCGAGCCTCCAGTATGTACCGTCTCTCTTCTTACTTCATGGCTCGAACAGTCATCGACTTGCCGATGGAGCTGCTATTACCGGCCATGTTCGTGACAGTACCTTACTGGATGAGTGGCCTAAAACCATCGGCATCCAAATTTATTCTGACCCTTTTGGTCACTCTTCTCAACGTGCTGACCGCTCAAGGGCTAGGCCTCGCACTTGGGGCCATTCTGATGGACGCAAAACAGGCTTCGACCTTTGCTTCTGTTATAACCGTGGGGTTTCTGATGCTGGGAGGGTTCTACATTGGACATCTCCCAGGCTTCATAGCTTGGTTGAAATATCTGTCATACTGTCACCACGCCTTTAAGCTTCTTCTGGGAATTCAATACACAGAAAATGAGACTTACGGCTGTGGGGCTGGGCTGCAATGTCGAGTAATGGATTTTCCTTCTATCAAGCTTGTGGGTGTTGGCGGCAACTGGCTGAGCGTGGCTGTTTTGGTACTAATGGCGGTTGGGTTTAGGGTCGTGGCTTATGTTGCTTTGAGGGTGGGGCAGCCTTTATGGCCCCGATTCAAACTTATTTTCCTCAAACATTTACGATCTTGA 1959 49.0 MSSSKHQEHNNGDSPSSSKPANPILPQLLQSITLKFEDVEYSVKLRSPKATCFGSNGAPITRTILNGATGMVRPGEVLAMLGPSGSGKTTLLTALAGRLSGNITGNITYNGNPFCGSIKRNIGFVPQDDLFYAHLTVVETLTYAAMLRLPRTLTKAEKLEQVEMVINEMGLSKCRNVWIGSPLLRGISGGERKRVSIGHEIIMNPSVVMLDEPTSGLDSTTAERIAGTLRRLARGGRTVVMTIHQPSARIYAMLDKVLVMSEGSSIYSGDAGRVVEYFASIGYGAHGGLNFVNPADFLLDLANGIAFASDTKEDDTQQGEFPEDRQTAIKQSLISIYRTNLYPSLKAEIQAEPQSESPPLFTSQQERWACSWWDQFVVLLSRGLKERKHESYSGSRIFHTMSISIIAGILWWRSSISNLQDQVGLLFIFAVNSSILAIYMAVFEFPKEQSILNKERASSMYRLSSYFMARTVIDLPMELLLPAMFVTVPYWMSGLKPSASKFILTLLVTLLNVLTAQGLGLALGAILMDAKQASTFASVITVGFLMLGGFYIGHLPGFIAWLKYLSYCHHAFKLLLGIQYTENETYGCGAGLQCRVMDFPSIKLVGVGGNWLSVAVLVLMAVGFRVVAYVALRVGQPLWPRFKLIFLKHLRS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9239197 9241469 + Carg01802-RA Car04g01598 147023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01598 652 Pfam ABC-2 type transporter 244 316 IPR043926 GO:0140359
Car04g01598 652 Pfam ABC-2 type transporter 375 580 IPR013525 GO:0016020|GO:0140359
Car04g01598 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 287 IPR003439 GO:0005524
Car04g01598 652 MobiDBLite consensus disorder prediction 1 23 - -
Car04g01598 652 SMART AAA_5 74 264 IPR003593 -
Car04g01598 652 Pfam ABC transporter 67 215 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01598 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - egr:104453835 741.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00871 Car-Chr1:7902413 Car04g01598 Car-Chr4:9239197 1.84E-163 dispersed
Car04g00564 Car-Chr4:3207243 Car04g01598 Car-Chr4:9239197 1.12E-39 dispersed
Car04g01524 Car-Chr4:8847707 Car04g01598 Car-Chr4:9239197 2.22E-89 dispersed
Car04g01598 Car-Chr4:9239197 Car16g00916 Car-Chr16:7506194 5.65E-150 dispersed
Car09g01000 Car-Chr9:6611249 Car04g01598 Car-Chr4:9239197 3.24E-10 dispersed
Car15g00432 Car-Chr15:2258746 Car04g01598 Car-Chr4:9239197 2.22E-58 dispersed
Car04g01598 Car-Chr4:9239197 Car14g00350 Car-Chr14:1706437 7.60E-172 transposed
Car04g01598 Car-Chr4:9239197 Car06g00489 Car-Chr6:2702294 8.14E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01598 Car_Chr04 FPKM 49.08902 48.756649 51.776863 50.7346 40.215885 39.389965 42.251949 40.347813 41.882133 42.016727