Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01601 ATGGCAGCGGCAAAGACACTGTGTTTTTCGTCTCCCGCGCTTCTTCAGCAATCCTTTAACCCTTCCCAGACTCGGCCGCATCCATCTATCAACGCATTCAGACCTATCGTCTCTTCGAAAGCAAACCCTAGCAATGGCTTCTTCATTAGGAGTAGATGCTTTCGTACAGCACCGGTTACTCGGGAAAACCGAAATAAGGTGCTTACGGTTTCAAGATTGGTGGATGGTAATTCTGGCGATGACGATGAATCTGCACAGAGAAATTCGGATACGGGGGCAGCCATTGATATAAAGCTTCCAAGAAGAAGTTTGCTGGTAACATTTACCTGTAACCAATGTGGTGATAGAACGAAGAGGCTCATCAATCGATTAGCTTACGAACGGGGGCTTGTTTTTGTTCAGTGTGCAGGGTGTCTAAAGTATCACAAACTGGTTGACAATCTTGGTCTTATTGTAGAGTATGACTTCCGAGAGGACGACGTGGATGTGAACTCGAATTCAGATCAAGTTTGA 513 45.61 MAAAKTLCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVTRENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9260022 9261912 + Carg01799-RA Car04g01601 147026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01601 170 ProSiteProfiles Zinc finger DNL-type profile. 99 170 IPR007853 GO:0008270
Car04g01601 170 Pfam DNL zinc finger 106 153 IPR007853 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01601 K17808 ZIM17, DNLZ, Tim15; mitochondrial protein import protein ZIM17 - csv:101206910 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01455 Car-Chr4:8449497 Car04g01601 Car-Chr4:9260022 3.98E-12 dispersed
Car04g01601 Car-Chr4:9260022 Car11g01385 Car-Chr11:11331783 2.36E-16 dispersed
Car04g01601 Car-Chr4:9260022 Car19g00590 Car-Chr19:7295777 2.21E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g222 . . . . . . . . Cmo04g01622 . . . Car04g01601 . Sed06g1847 . . Bhi07g01387 Tan04g0921 Cmetu10g1685 . Hepe10g1854 . . Cla05g02347 . . Cco05g2587 . . . . . . . . Csa05g02562 Chy10g01102 Cme10g00308 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014185 0 1 0 0 0 0 1 1 0 1 2 0 1 1 1 1 0 0 1 0 1 1 1 0 1 1 1 1 2 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01601 Car_Chr04 FPKM 0.178333 0.0 0.22826 0.0 0.296749 0.327213 0.431639 0.0 0.0 0.0