Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01609 ATGGCGATGGAGGAGGGAGCACGGCGGCAGCAACGAGAGGGAGACTGGATGCACGCCCGCCCGCCCGCCCCAGCTCGATTGATTGATGGATGGATCTTGGCCGAAAGCAATAATGGGCTGCGCAGAATAGCGCCTCCTTTTAGTCACTCTGCTTTGCGTTTGTTTCCTTCTTCTGCTCCTTCACTGTCTTCTTCCTACAAAACTGTCATCTATCAGCCCGTCAAGGAAGCAGTGGCCATGAGGGAGAGAGGCAAAGCTCTGGCTGTTTACAGCAACGATATGGACTTCTATTCCTCTGCTTCTGAGTTTCCCTGTAAGAAACACCCTTCTTCTTCCTCTGTTGGTATCTGTGCTGATTGTTTGAAAGATCGGTTGATCAGGCTTGTTTGTTCTGACTGTGGGGAGCAGAGGCTCTCCTCCTGCTCCTGCTCTGAGATCTCGTCTAATCGAAATTCATGTACTGTGGAAGTGGGAAGTGTTGGGAGAGTTTCGTTTTTAATTGAGAATGAGAGAAATGGCGTTTCGTTGTTGGGTCCGATGAAGCCCAAGATGGAGAAAAGGGAGGAGATCGTGCTTCTGGAGAGAAGCAGTAGTAGCTGTGTGGAGAGTAAGAAGAGTGGGTTTTGGAGGATCGGGAATTTTTTCAGGAAAAAGAGGGAGAAGGGATGTGAGAGATCAAGCGTCTGCGGGTTTGATGAAAAGAGCGATATTTGTATGGTTGATTACATGGGTGTCTCAAGATCGAGATCTCTCTGTAGTTTTCGTGGCGGCGGGTATTTTGGGTCGGAGGACGGCGGAGACATGGTGGTTTCTGGTGGCCGGAGCTCGATTTCCGGTGCAAGAACATCGAGTGTCAATGGAGGACTCGTCTGTGATTCCGCCAGAAGAAGTGGATTCAGCGAAACAGAGCCAAGAAAAAGCGGTTTCGAGAGCGATCACAGGGATTGTGGAAATTATGAAAGCGATCACAATGGGTTGAGTTTAGCTAGTAGACGTGTATTTTCTTTAAAAGAAAGCGATTTTAACGGGATGGATGAATCTGGGTTCATAGATTTCAAGTTGGATTTCACATCAGAAACAAAGCCAGACATCTCTGTTCCCAAAATGGGTCTGGGTCTGGGTCTGGGTCTTGGTTTGGGACCTTTCTCAAACCCCAACTCTGCATTTGGGAGCTCGAGAGCTTTCGACATGGCGCTTTACAGTGGCTCCACCGGCGAAGGGATCATCGGCAGCGGCGGAGGTTCCTGTAGAATAACAGTCAGTGACAGAGGCATAAAGAAGGGGAGGAAAAGCTTGAAATCATGGAAATGGATGTTCAAGCATCCGCCAAACTGGGCAAATGCTGCAACATCGAGGAAGAAAGAAGAAGAATTAATGTCTAAAACTTGA 1389 48.52 MAMEEGARRQQREGDWMHARPPAPARLIDGWILAESNNGLRRIAPPFSHSALRLFPSSAPSLSSSYKTVIYQPVKEAVAMRERGKALAVYSNDMDFYSSASEFPCKKHPSSSSVGICADCLKDRLIRLVCSDCGEQRLSSCSCSEISSNRNSCTVEVGSVGRVSFLIENERNGVSLLGPMKPKMEKREEIVLLERSSSSCVESKKSGFWRIGNFFRKKREKGCERSSVCGFDEKSDICMVDYMGVSRSRSLCSFRGGGYFGSEDGGDMVVSGGRSSISGARTSSVNGGLVCDSARRSGFSETEPRKSGFESDHRDCGNYESDHNGLSLASRRVFSLKESDFNGMDESGFIDFKLDFTSETKPDISVPKMGLGLGLGLGLGPFSNPNSAFGSSRAFDMALYSGSTGEGIIGSGGGSCRITVSDRGIKKGRKSLKSWKWMFKHPPNWANAATSRKKEEELMSKT 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9305578 9307362 - Carg01791-RA Car04g01609 147034

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01609 - - - cmo:103489222 670.233
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01609 Car18g00988 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01101 Car-Chr16:9482284 Car04g01609 Car-Chr4:9305578 7.66E-06 transposed
Car18g00988 Car-Chr18:10382940 Car04g01609 Car-Chr4:9305578 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g204 . . Bda01g02107 . . . . . Cmo04g01630 Cmo18g01087 . Cma18g01066 Car04g01609 Car18g00988 Sed06g1837 . Cpe01g01384 Bhi07g01401 Tan04g0930 Cmetu10g0942 Lac13g0432 Hepe10g1846 . . . . . . . . . Cone13ag0878 . . . Lsi04g00317 Csa05g02553 Chy10g01092 Cme10g00318 . . . . . Bpe02g02296 Bma01g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011251 1 1 0 1 1 1 2 1 1 0 0 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01609 Car_Chr04 FPKM 16.119291 13.409715 19.024372 17.761532 15.807058 16.419416 15.448428 22.36367 21.318165 21.97563