Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01612 ATTTTGTTCTTCTTGTTCTTGTTTTGCTTAGGGGATTCTTCTGTAGATGCTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTGCAAGCCCTGATGGCCATCAAAGCTGCTCTGAAAGACCCTCATTCTGTTCTTAATTGGGATGAAAATGCTGTGGATCCATGTAGCTGGACCATGATCACCTGTTCTCCACAGAAACTCGTCATTACCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTACCCTGTCGCCGAGCGTCGGAAATTTGACAAATCTTCAGTCGGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTGGCCTTGCCACTCTTGATCTTTCAAGCAATGCCTTCCATGGACAAATTCCCACTTCTTTCTCCCATCTTAAGAGTCTTCAATATCTGAGGCTAAATAATAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGCTGGATCTGTCTTTTAATAATCTCAGTGGCCCATTGCCCAGATTGCTACCTAAAACCTACAACCTTGCTGGGAATTCACTCATTTGCTCGCTTGGGTCCGAGCATAGCTGCAATGGCACCGCTCCACCTCTCTTATTTCCAGTCGATACGCCTCAAACACCTTCTGGGAGATCCAAGAGCCACAGATTAGCCTTGGCTTTTGGCTCAAGCCTTGGATGCGTTGTTCTGCTGATTGTTGGGTTAGGCTGCTTTATTTGGTGGAAGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGATCAACGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCCACAAATAACTTCAGCAGTAAAAACTTGGTGGGAAAGGGTGGGTTTGGGTATGTGTACAAAGGGTACCTTCAAGATGGTACAGTTGTAGCTGTGAAGAGGCTAAAAGATGGAAATGCTATCAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTAGCAGTGCACCGGAACCTCCTCCGTCTTTACGGGTTCTGTACGACAACCTCAGAGAGACTGTTGGTTTACCCCTATATGTCCAACGGCAGTGTCGCATCCCGTCTCAAAGCAAATCCAGCTCTGGATTGGAGCGCGAGGAAAAGAATAGCATTGGGTGCAGCAAGAGGGTTGCTGTATCTGCATGAGCAGTGTGACCCTAAGATCATACATAGGGATGTTAAGGCTGCAAATATATTGCTTGATGATTACTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGCGGAACTGTTGGCCATATAGCTCCCGAGTATCTCTCCACTGGCCAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGCTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTAACCAAGAAAAGAAGCTTGAAATACTAGTTGACAAGGATATAAGGAAAACTTACGACTGGATCGAGCTTGAAGAAATGGTTCAAGTAGCTCTCTTATGTACGCAGTACCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCTTCCGGGCGATATTCTGATCTTACAGATGATTCTTCCTTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1842 45.49 ILFFLFLFCLGDSSVDALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWTMITCSPQKLVITLGAPSQNLSGTLSPSVGNLTNLQSVLLQDNNISGTIPMELGNIPGLATLDLSSNAFHGQIPTSFSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLPKTYNLAGNSLICSLGSEHSCNGTAPPLLFPVDTPQTPSGRSKSHRLALAFGSSLGCVVLLIVGLGCFIWWKQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGYVYKGYLQDGTVVAVKRLKDGNAIRGEIQFQTEVEMISLAVHRNLLRLYGFCTTTSERLLVYPYMSNGSVASRLKANPALDWSARKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKINQEKKLEILVDKDIRKTYDWIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSGRYSDLTDDSSLLAQAMELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9316188 9318963 + Carg01788-RA Car04g01612 147037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01612 613 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Car04g01612 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Car04g01612 613 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Car04g01612 613 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Car04g01612 613 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01612 613 Pfam Protein kinase domain 294 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00878 Car-Chr2:6273457 Car04g01612 Car-Chr4:9316188 1.48E-27 dispersed
Car04g01612 Car-Chr4:9316188 Car05g00023 Car-Chr5:126905 0 dispersed
Car04g02726 Car-Chr4:21075052 Car04g01612 Car-Chr4:9316188 5.70E-25 dispersed
Car12g00019 Car-Chr12:108429 Car04g01612 Car-Chr4:9316188 4.88E-26 dispersed
Car04g02119 Car-Chr4:17248356 Car04g01612 Car-Chr4:9316188 0 transposed
Car04g02120 Car-Chr4:17250211 Car04g01612 Car-Chr4:9316188 5.18E-27 transposed
Car18g00991 Car-Chr18:10395919 Car04g01612 Car-Chr4:9316188 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88816 PF00069 Pkinase 1.60E-44 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01612 - - csv:101208127 1082.78