Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01613 ATGGGTGACATTTTGGGCATGGATCATTTAAGCGATCTGCCTCAGAGCATTATAGAATGCATTCTCACTAGGTTACCGATTAGAGATGCTATTAGAACCAGTGTTTTATCTAGGAGATGGAGATATAAGTGGAATACCCTTACTCAACTTGTGTTTGATGATGATTGTGTTGCCATGTCCAACGATGGAATTTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCATGAAGGTCCAATTCACAAGTTCCATCTTTCTGCTACCTACTTACAGAATACCCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCATCAGGGAATTGATTATTGAATTGGGAGACGGTGAGTGGTTTAGGGTTCATTCTTGTCTTTTTAACTGTAGTAAATTGACCCTATTGGAGCTGTATCGTTGTGAATTGGATCCACCTCCTACCTTTAAGGGATTCTTATGCTTGAAAAGCCTAAAGCTTCATCAAGTTCTGATTGCACCCGAAGACATTGAAAGTCTTATTGCTAATTGTCCACTCCTTGAGACTCTGGCGCTTTCCTACTTCGATAGTCTAGTCCTTAATATCTGTGCTCCCAATCTCAAGTACCTCTATCTTGAAGGCGAGTTTAGAGACATATGTCTCAAAAACACGCCACTCTTGGTTGCAATTTCGGTTGCATTATATATGAATGATGATACTGAGCCCTTTGGTGACAATTCTGATTGCAATTTTGAGAAGTTTTTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCATGTTTATTTCACCAAGTATCTGAGTATAGGTAATAGTGCCAGAACTCTACCGGTTTCACATATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGTTTTGAAGATATGAATGAGATACTTGTTGTGCTTCGCTTGATTACCAGCTCTCCGAATTTGGAGGAGCTGCATGTTTCGGGCTCCTCAAACCCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTCGAACTGTACATTTGGTAAACTTAAAGTTGTGAAAACGACAGACATGTCTGGTGTACCACACGAGATGGAATTTATTAAATATTTGCTTAGGAATTGTCCGGTGCTTGAGACAATGAGTATCAGACCTTGTGTCTATGTTACAGATCGACGATTGAATATGTTGATTGAACTGTTAAAATTTAGGAGGGCTTCACCTCAAGCAGAAATTTTGTTCATCCAAGAATAG 1257 39.7 MGDILGMDHLSDLPQSIIECILTRLPIRDAIRTSVLSRRWRYKWNTLTQLVFDDDCVAMSNDGIYEDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWMLFLSRKGIRELIIELGDGEWFRVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLIANCPLLETLALSYFDSLVLNICAPNLKYLYLEGEFRDICLKNTPLLVAISVALYMNDDTEPFGDNSDCNFEKFFGGVPYLEKLTGHVYFTKYLSIGNSARTLPVSHIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELHVSGSSNPVAASEAPDLDFWENECPSNCTFGKLKVVKTTDMSGVPHEMEFIKYLLRNCPVLETMSIRPCVYVTDRRLNMLIELLKFRRASPQAEILFIQE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9319426 9321014 - Carg01787-RA Car04g01613 147038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01613 418 Pfam F-box domain 10 42 IPR001810 GO:0005515
Car04g01613 418 Pfam FBD 345 384 IPR006566 -
Car04g01613 418 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01613 - - - csv:101208370 813.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01046 Car-Chr3:8574792 Car04g01613 Car-Chr4:9319426 3.69E-08 dispersed
Car04g01613 Car-Chr4:9319426 Car05g00672 Car-Chr5:4212440 2.42E-14 dispersed
Car02g00119 Car-Chr2:719893 Car04g01613 Car-Chr4:9319426 6.10E-07 transposed
Car18g00992 Car-Chr18:10400190 Car04g01613 Car-Chr4:9319426 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1027 . . . . . . . . Cmo04g01632 . . Cma18g01071 Car04g01613 . . . Cpe01g01386 . . . . . . . Cla05g02358 Cam05g2527 Cec05g2554 Cco05g2595 Clacu05g2522 Cmu05g2384 Cre05g2499 . . . Cone9ag0506 . . . . . Blo11g00816 Bda07g01512 . Bpe11g01675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01613 Car_Chr04 FPKM 5.688193 5.539256 4.363849 4.107523 8.476392 7.358895 8.510956 3.176565 2.6572 2.675324