Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01619 ATGAAAGCTGACACTCTAAGCATACACAACCCTGCTCTTCCGCACCCAGTGAGGCCTTTCAACAGAGCTTCTTTCCCGCGCTCAAATCTCTTCTCTACTTTCGGTTTCATTCCCAAACCTTCCCGCCATCCGGGTTCCTTTCGCTTGCCTCAGACCTCCTGCTTCAAGGGTGTGCGATATGACAGTCCAGTAATGGGCGCAACGGAGTTATCCGAGCTTGAAGATGTGGAACTGATGGTGGAGATGTGCATTACACATACACTGCCACCGGCTCTGACGCTTAAGCAGGGGCTGGAGAGTATCAGTGAGGCTATTGATAAGTTGAAGTTAGAATCTCCACGTTCTTCCGACGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTGAAAGAGCTCTTATGTGGTTTTGTTGTCAACCAGAGTCATCTGAAATGTATCCTATCTTTTTCCTTTCCAAGGAGAAGGACGCAACAATTAAGTCACTGTACTTGAATGATACTCGCGGTGTTTTTGGAATTGGGACTGCAATTTACTTTGCTAGCTTGTCTTCTACTTCATCAAAACAATGTACATTGAAAAGGTATCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAATACCGGGGAGACATCTTCACTGAAGAACGAGGCTGGTCATTCATACTTTTGCGTTCCTCAAATTGAGTTGAATGAGTACGAGGGCGTTTCTGTTCTCTCTGCAACACTTGCATGGAGTGAAGCTTTCCCTTGTACATTTGAGGAAGCTCTTCATTCTTTGGGGTCATCTATCTACCAGATTGGTACTAATTTTCCATCTAAAGAAAACTTCCAGTACAAATATATAAGATCTTCTTTAACAGCTTCGAAACTTGTGGACGTGACACATCAGATGGGATACATGAAAGTATTTTCTGTGGCTGGCGAAAGCTTCAGGACTGGCATCATGGAAATGAAGGAGTCTGCACGCTCCCATCAATTCTGCATTCGGCTTTCACCAAGTGTTGCCGTTGCATGTAATATGTTGGATCGTACCAACGAAACCTGTCTCTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGTTCATAGTTGAAGAATGTTCGCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCGTCCCCTCTTGCCATTGCTGCTGCAAGTCATCCCCTGATAACATGTATTTCTTGCTTTGATGAACGCTCTCTTGCTTTTCATGCGATCGGGTATGCAAAAGGATCTCATAGCCCAGCAGTCGTAATCACATCATCAGGCACTGCTGTTTCGAATCTTCTGCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTCTATTGCTCACAGCTGACCGCCCCCTGGAGCTGCAAGATGCAGGAGCAAATCAAGCTATCAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATGAAATTCCCGCCAGAATGGTGCTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCGCCTTGTGGCCCTGTTCACATAAATTGTCCATTTAGGGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTCCTTAAATGGATTACAAAATTGGTTATCAAGCAGTGAAGCTTTTACCAAATATATTCGACTTGAAGCATCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTAAAAGTAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGGTCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTGTTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGCTTGTCTTCCTTCCTAGAAGTGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCCTTGCTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATGGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTAGAGGACTGCAGTCCCTGTTCTTACATCATGGTTGATGAGCATCCAGGTCGTCATGATCCATCGCATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTGGGTTGCTTACTTAAAACTGGTTTTCCTCGCAATAGGAGCAAGTGGACTGCTACTCTACTAGCCTTGAATATGATGGTTGAGTGGGAAATACAATTTCAAATTTCTGCTAACTACTGTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAGGCACTTCCATTTGATTCTGTTCTGTTCTTGGGGAATAGCATGCCAATCCGTGATGTTGATATGTATGCACGTGGTTGGTCAAAATGCACCGACAGTGTAGCGGTTAGACCATTAAACTTACAACTGCCTTTTTGCTGGACATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTAAGCACGGCTGTTGGTTTCTCTGTTGGCTGCAACAAACGAGTGCTTTGTGTAGTCGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTGGCAATTTTGAACCAGAGGATGACGAGGAAACCAGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTTAGTCTCCTCCCTATCAAGGACAAAGTAGAGGCAGCAATACTGGACCAGTTCTTCCACACCTCTCACAAGATTTCACTCCGTAGCTTATGTGTGGCACATGGCCTCAAGCATTTACATGTGCGGACAAAGATGGAACTCCAAGATGCTTTATTTATGTCTCAATGTGAAGAAAATGACTGCATAATCGAGGTTGAAAGTTCCATTGATGCCAATACTTCCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGACCATGGTTTACGGATCTTTTCAAGGCTTTATTTTGAAGAATCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATACACATTGTTCAGAATCCCTTTATGTGCTCCAACTACAACCTCATCTAGTTCTATTGATCAAGTCAATCGGGGGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTTGAGGACGGAAGTCTTGGGCTTGGTGAGGTTTCACCCCTTGAAATTCACAAAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTTCTTCATATATTTAAGGGAGCCAAGATCAGCAGCTCCATTCCTCTACTACGGGGTTCATTTTCATCTTGGATTTTCCATGAACTGGGAATACATCCACGTTCGATCTATCCAAGTGTTAGATGTGGCTTGGAAATGGCTGTTCTTAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCGGTTAGTTGAAGAAGACGACTTGTCATCTTCGTCAAAAGTTAAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTAGCTCGTGTTGCTAAGACACTGGTCGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAAGGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAGATTGAACTCCGTGTTGATGCCAATCGGAATTGGAGCTATGAAGAAGCTATTCTATTTAGCTCTTTGGTGAAGGACTGTGGCTTGCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTGTTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTATCGATGGTATTCAAGATAATCCTGTGAAAGAACTTGCAAAGTATGTTCATCCCGGAATTGTTGCTATAGTTATAAAACCCAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCAAGGTGGGCACAGCAACACGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATACATACACTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAATAAGAAAACTGATGGATATTCAACCAGCTCCATCTATAGCCCATGGTCTAGGAACTTTCCGTTGGCTTGACGAAGATGTAACTGTCAATCCTCTCAGAATTGGTCGTGACCCTCATAGTGGCATTATAGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAAAAGTTTTCAAATCAACCAGAAGGTTGTTTGTAGAAAGTTTACTGAAGAGCAAGTTCGTAGGTACAAATTAACTGTAGACTCAAAGGGGTTCTCTTATTTAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTATTATTTCTTCATGGATTTCTTGGGACTGGTGAAGACTGGATTACAATCATGAAGGCCATCTCAGGTTCAGCTAGATGCATTTCTATTGACCTTCCTGGTCATGGGGAATCAACAACACAAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTTTTCTATGGAGGTTGTTGCTAATCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTAACCTCGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGCTGATAAGATTGGAAGAGCTGCTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGAAGAATCCGGAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGCCTATGGTTTAGAGAGCTTTCTTGAAGCATGGTATCGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATCGAAGCATGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATGCTGCAAAACACCTCTTTCAATCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGCAAATTCTATCTCAAATTGATATGGGCAGGAAGATCAAGGATGACCCAGTTGTTTCCCTCCATGAAATAGTCGAGATCCCGGACTCAGGACATGCTGCCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAAATTTCTAATAAGGAGTAGAACACAGTTATCCTACAATTCAGACTTCTCAGGCCAAGTCGCAATTACGCATGAGAGCCACCTTTTGTAA 5199 42.47 MKADTLSIHNPALPHPVRPFNRASFPRSNLFSTFGFIPKPSRHPGSFRLPQTSCFKGVRYDSPVMGATELSELEDVELMVEMCITHTLPPALTLKQGLESISEAIDKLKLESPRSSDGVFRFQVAVPPSERALMWFCCQPESSEMYPIFFLSKEKDATIKSLYLNDTRGVFGIGTAIYFASLSSTSSKQCTLKRYLMNDSAPIMAYGFVNANTGETSSLKNEAGHSYFCVPQIELNEYEGVSVLSATLAWSEAFPCTFEEALHSLGSSIYQIGTNFPSKENFQYKYIRSSLTASKLVDVTHQMGYMKVFSVAGESFRTGIMEMKESARSHQFCIRLSPSVAVACNMLDRTNETCLSEQEHANINALWASFIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLITCISCFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPLELQDAGANQAINQVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVRKWLKFDVIIQMGSRVTSKRVSKMLEDCSPCSYIMVDEHPGRHDPSHIVTHRIQSTVLEFVGCLLKTGFPRNRSKWTATLLALNMMVEWEIQFQISANYCLSEPQVAQVISEALPFDSVLFLGNSMPIRDVDMYARGWSKCTDSVAVRPLNLQLPFCWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKISLRSLCVAHGLKHLHVRTKMELQDALFMSQCEENDCIIEVESSIDANTSFHSVLRKFTCQAVDHGLRIFSRLYFEESVSPGLFLCKISRMEYTLFRIPLCAPTTTSSSSIDQVNRGFFREGFILSLFLEDGSLGLGEVSPLEIHKENLLDVEEQLKCLLHIFKGAKISSSIPLLRGSFSSWIFHELGIHPRSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHRLVEEDDLSSSSKVKICGLLDSGGTPSEVARVAKTLVEEGFPAIKLKVARQGNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIVKFCEESGLPVALDETIDGIQDNPVKELAKYVHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNAEIRKLMDIQPAPSIAHGLGTFRWLDEDVTVNPLRIGRDPHSGIIEASVAEANRLLKSFQINQKVVCRKFTEEQVRRYKLTVDSKGFSYLIKVLEVGQRTNDNVLLFLHGFLGTGEDWITIMKAISGSARCISIDLPGHGESTTQKNDCDVHGVEEPSFSMEVVANLLYKLIHHLAPGKVNLVGYSMGARIAMYMALRFADKIGRAAIISGSPGLKDKMARRIRRVKDDSRARILKAYGLESFLEAWYRGELWKSLREHPHYSQIIASRSKHDDVQHLAKALSDLSIGRQPQLWDELKCCKTPLSIIVGEKDTKFKTIAQQILSQIDMGRKIKDDPVVSLHEIVEIPDSGHAAHLENPLAVINALSKFLIRSRTQLSYNSDFSGQVAITHESHLL 1732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9343028 9359228 + Carg01781-RA Car04g01619 147044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01619 1732 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1708 IPR004433 GO:0009234|GO:0030976|GO:0070204
Car04g01619 1732 SUPERFAMILY alpha/beta-Hydrolases 1430 1706 IPR029058 -
Car04g01619 1732 SMART MR_MLE_2 1159 1255 IPR013342 -
Car04g01619 1732 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 361 968 IPR004433 GO:0009234|GO:0030976|GO:0070204
Car04g01619 1732 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 936 IPR029061 -
Car04g01619 1732 SUPERFAMILY Enolase N-terminal domain-like 996 1131 IPR029017 -
Car04g01619 1732 SFLD o-succinylbenzoate synthase 997 1373 - -
Car04g01619 1732 Pfam Enolase C-terminal domain-like 1163 1355 IPR029065 -
Car04g01619 1732 Gene3D - 1139 1379 IPR036849 -
Car04g01619 1732 Gene3D - 574 750 - -
Car04g01619 1732 Pfam Middle domain of thiamine pyrophosphate 546 779 IPR032264 -
Car04g01619 1732 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 370 537 IPR012001 GO:0030976
Car04g01619 1732 CDD TPP_SHCHC_synthase 758 953 - -
Car04g01619 1732 Gene3D alpha/beta hydrolase 1432 1706 IPR029058 -
Car04g01619 1732 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 1029 1337 - -
Car04g01619 1732 Pfam alpha/beta hydrolase fold 1440 1549 IPR000073 -
Car04g01619 1732 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1207 1238 IPR018110 GO:0009063
Car04g01619 1732 CDD TPP_PYR_MenD 371 530 - -
Car04g01619 1732 Gene3D - 359 556 - -
Car04g01619 1732 SUPERFAMILY DHS-like NAD/FAD-binding domain 523 740 IPR029035 -
Car04g01619 1732 Gene3D - 998 1138 IPR029017 -
Car04g01619 1732 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 829 936 IPR011766 GO:0003824|GO:0030976
Car04g01619 1732 Gene3D - 757 967 - -
Car04g01619 1732 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 360 540 IPR029061 -
Car04g01619 1732 SUPERFAMILY Enolase C-terminal domain-like 1155 1374 IPR036849 -
Car04g01619 1732 SFLD Enolase 997 1373 - -
Car04g01619 1732 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 367 838 IPR004433 GO:0009234|GO:0030976|GO:0070204
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01619 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 3036.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01619 Car-Chr4:9343028 Car11g00138 Car-Chr11:778347 4.49E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01619 Car_Chr04 FPKM 0.129988 0.080027 0.409192 0.468614 3.485864 3.004195 2.213329 0.418617 0.387175 0.532156