Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01621 ATGAAGCCCAAATTCAATGGAATTTACTCGAACAAAAGCTTGAATGAGCTATGGAGTACTGAAAGTGCTATTGCAAAAGTTGTGTATCTTAGTCGACATATTATGGATAATTCCATCAGCTGTTCGCATAGCATGTTTTCGGATATGAGATTTGGCGAGACGACTCTCACCAGTATGCCAGAGGCTGTGGTTGAGCCATTTAGCTCTACTGTTTGGGAACAAGCAGCTAATTCCCAAAACATGGGAACTAGCAAGGCTAGTGGCTGTCCAGTTTCTTTGAGCACTGATATCAGCTGGAACCTATCACATAATATGTTTAAAGGGGGGATTTATCTACCTCACGGCGTGCTCCCGCAGAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGCTCTCCTGTTTTAGTGGTGATATTGTTGGCCATTTCAACATTCATGAGCCTCCTATGAGTGTTTCAATCCCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGCTTGGTTTCTGGAATTGAAGGACAATCTCAGAGAACTAATGAACATGGAGCTGATGAAAATGGAAGACCTTTGAAAGTGGATGATCGTGGTAAACAAGCTACTGATGGTTCTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGCGGTGATGGGCCATGTGCGTTAGAGGTCACAGCCAACCAAGTTTCTGGCAAGGGCCGGAAAAGGAAAAGAAGTGGACAGGTAATGAATAATGATTCTTGTTCTGATCAACCCAATGGACCTCTGCAACAAGCTACTGTTTCAGCTAAGAATGATACTCAAAATCAGCCAAAAGGAGATCAAAATCCAAGCTCAACTGCTAACAAGGCTGCAGGAAAACATGGTAAACAGGCGTCTCAACCTTCAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGACGGGGCCAGGCGACGAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACCGGAAAGGCGGTGATGCTAGACGAAATCATTAACTATGTCCAATCGCTGCAACGACAAGTCGAGTTCTTATCGATGAAACTCGCTACCGTGAATCCAAGGATGGATATCAACATCGACGGGCTCCTAGCCAAAGATATTCTTCAATCACAAGCTGGTCCATCATTGACATATATGCCCACCGGTTGTCCCCCGCCTCGTGTTTCTCATCAACGACTTATTCCAAGCGGTTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGGAAAATGAGTTCCCAGATGAATCCAAGGTCTATTGGATTTAAGGAGCCTTCTCAGATAAAGAGTGTGTGGGATGGTGAGCTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCTCAATTGTTTAGAACTCGAAGGTAAAATAAGAACTACCCGTCTCGCTCAAACATCGAAACTCCATCCCGAAATCGTTGAACTCAAATAG 1527 44.73 MKPKFNGIYSNKSLNELWSTESAIAKVVYLSRHIMDNSISCSHSMFSDMRFGETTLTSMPEAVVEPFSSTVWEQAANSQNMGTSKASGCPVSLSTDISWNLSHNMFKGGIYLPHGVLPQSLSQLPADSSFIERAARLSCFSGDIVGHFNIHEPPMSVSIPERWDEIPRNGLGLVSGIEGQSQRTNEHGADENGRPLKVDDRGKQATDGSSANESDEAEFSGGDGPCALEVTANQVSGKGRKRKRSGQVMNNDSCSDQPNGPLQQATVSAKNDTQNQPKGDQNPSSTANKAAGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDINIDGLLAKDILQSQAGPSLTYMPTGCPPPRVSHQRLIPSGFPAIGSSEMLRKMSSQMNPRSIGFKEPSQIKSVWDGELQNIVQMSFGMSTTLNCLELEGKIRTTRLAQTSKLHPEIVELK 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9365225 9367717 + Carg01779-RA Car04g01621 147046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01621 508 MobiDBLite consensus disorder prediction 248 295 - -
Car04g01621 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 368 IPR011598 GO:0046983
Car04g01621 508 MobiDBLite consensus disorder prediction 184 206 - -
Car04g01621 508 Pfam Helix-loop-helix DNA-binding domain 321 369 IPR011598 GO:0046983
Car04g01621 508 MobiDBLite consensus disorder prediction 170 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01621 Car18g00999 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01375 Car-Chr1:12071042 Car04g01621 Car-Chr4:9365225 8.83E-58 dispersed
Car04g01621 Car-Chr4:9365225 Car04g02113 Car-Chr4:17212997 1.09E-109 dispersed
Car06g00071 Car-Chr6:450901 Car04g01621 Car-Chr4:9365225 9.11E-26 dispersed
Car18g00999 Car-Chr18:10438430 Car04g01621 Car-Chr4:9365225 4.96E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3379 PF00010 HLH 5.50E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01621 - - cmax:111488734 870.152