Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01622 ATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTCTCTGAGGAAATGCGGGATACTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCCCGCCTCGAAGCGGAATCTGTCACTCCCTCCTTCGTTCTGGGCCAGAACGACCCAGTTTGTGAGATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTAGTTTCTACTTTGAGTGAAACTGTAGTGGACGGCGTTCTTGAGAGTTTGAATATTCAGAATCCTGATGTTGCTGTGGCATTTTTCTATTTGTTGAGAAATAAGTACGGATTTCGGCATTCCGGATTCTCCCAGCTTGCCGTTTCTCATATTCTAGCGGGTAAAGGAAGATTCAAGGAGTTGCATTGCGTTATAAAGCAATTGGTTGAGGAGCAAGGGTCGGGTTCTGCATCTTCCTTTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATGGTGTGGTATGGGATATGCTGGCATTTGCGTATTCTAGACATGAAATGATCCATGATGCCCTCTTTGTCGTCGCAAAAATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTAAGGCACACTGATGTCATGTGGGATATATGCAATGAGATCAAAGCTAGTGGAGCTCCTCAGAGTGAATATACTACCTCAATACTTATACACGGCCTATGTGCGCAGTCCAAGTTACAAGATGCGATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCGTTATGTCAAAGTTTTGTAAAGTGGGGCTAGTAGATGTTGCAAGGTCATTTTTCTGTTTGATGGTCAAGAATGGACTTCTTCCTGATTCGTACAGTTATAATATTCTTATTCATGGGTTATGTGTAGCAGGTTCCATGGATGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAGCCTGATGTAGTAACATACAACACACTTGCTAAAGGTTTTCTCTTGCTTGGTTTTATGAGTGGGGCCTGGAAAGTCGTCCAGAAAATGTTGCTAAAAGGTCTAAATCCGGATATCGTGACATATACAATACTGATATGTGGGCACTGTCAAATGGGAAATATTGAGGAAGCCCTTAAGCTGCGGCAAGAAACCCTTTCAAGGGGGTTTCAGTTGAACATCATTTCTTACAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGAATAGAAGAAGCATTGGCATTGCTCAATGAAATGGAAACTCTACGTTTGAAACCTGATCTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTACAAAGGGCTTACCAACTATATGAACAAATGCGTTTGAAGAGAAATTTTCCTAACTACTTTGCTCAACGTGCTGTACTTTTGGGTTTCTTTGAGAATGGAAATATTTCTGAGGCAAGAAGATATTTTGATGCTTTGACTCATATGGATCTGATAGAGGATATTATTTTGTATAATATTATGATTGATGGTTACGTAAGGCTTGGTGATATTTCTGAGGCTATGCAGCTATATTACAGAATGTTTGAAAGGGGGATTACTCCAACTGTTGTCACTTTCAACACTCTTGTCCATGGGTTTTGCAGAAATGGAGACCTAGTGGAGGCTCGAAAGATGTTCGAAATCATTAGGTTGAATGGATTGCTACCCAGTGTAGTAACTTATACTACCCTTATGAATGCGTACTGTGAAGCGGGAAACATGCAGGAAATGTTTGATCTACTCCATGAGATGGAAGCAAATGCTGTTGTTCCAACTCATATAACTTATACTGTACTAATCAAAGGACTCTGCAGACAGAATAAAATGCATGAAGCCCTCCAGTTACTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCAGATTACATATAATACTATTATCCAATGTTTTTGCAAGGCCAGAGACATTGCAAAAGCTTTCCAGGTTTATAATGAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAATGTACTTATTAGTGGTCTTTGTGTATATGGTGACCTAAAGGATGCTGATCGAATGCTGGTTTCTATGGAGGATCAAAATATTAGCTTGACAAAAGTTGCTTATATGACAATTATTAAGGCACATTGTGCAAAGGGTCAGGTGTCTAAGGCATTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTCATTTCCATCAGAGATTATAGTGCTATCATTAATAGGCTGTGCAAAAGGGGTCTAATTACTGAAGCAAAGTACTTATTTGCTATGATGTTATCTGAAGGTGTAACGCCTGATTCTGAAATCTGCGAGACAATGCTTAATGCTTTCCATCAACATGGTGATAGCAGTTCAGCATTTGAATTTCTTGCTGTGATGGATGTAGGGATAATTTTCCCTCCGTGGCATGTATCAAACTTTATGCCTCAGATAAGCAACGAAAGGAAAGTCATGGCAATGACCCTTGTGGACTCTCCCAGCTTGGAGGCTGCAGCAGACAGTCTTATAGAGTGGTTATGA 2616 40.21 MLSRIHQWKPLHSLRKCGILASFSSVILARPSVSAARLEAESVTPSFVLGQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDGVLESLNIQNPDVAVAFFYLLRNKYGFRHSGFSQLAVSHILAGKGRFKELHCVIKQLVEEQGSGSASSFCDLLLNKFRNWDSNGVVWDMLAFAYSRHEMIHDALFVVAKMKDLNLQASVPTYNSLLHNLRHTDVMWDICNEIKASGAPQSEYTTSILIHGLCAQSKLQDAISFLQDSNEVVGPSIVSINTVMSKFCKVGLVDVARSFFCLMVKNGLLPDSYSYNILIHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGFMSGAWKVVQKMLLKGLNPDIVTYTILICGHCQMGNIEEALKLRQETLSRGFQLNIISYSVLLSCLCKVGRIEEALALLNEMETLRLKPDLIVYSILIHGLCKEGFVQRAYQLYEQMRLKRNFPNYFAQRAVLLGFFENGNISEARRYFDALTHMDLIEDIILYNIMIDGYVRLGDISEAMQLYYRMFERGITPTVVTFNTLVHGFCRNGDLVEARKMFEIIRLNGLLPSVVTYTTLMNAYCEAGNMQEMFDLLHEMEANAVVPTHITYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDQITYNTIIQCFCKARDIAKAFQVYNEMLLHNLDPTHVTYNVLISGLCVYGDLKDADRMLVSMEDQNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYLFAMMLSEGVTPDSEICETMLNAFHQHGDSSSAFEFLAVMDVGIIFPPWHVSNFMPQISNERKVMAMTLVDSPSLEAAADSLIEWL 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9369166 9375464 - Carg01777-RA Car04g01622 147047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Car04g01622 871 Pfam PPR repeat 373 403 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Car04g01622 871 Pfam PPR repeat 767 795 IPR002885 -
Car04g01622 871 Pfam PPR repeat 730 758 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Car04g01622 871 Pfam PPR repeat family 518 566 IPR002885 -
Car04g01622 871 Pfam PPR repeat family 272 320 IPR002885 -
Car04g01622 871 Pfam PPR repeat family 587 636 IPR002885 -
Car04g01622 871 Pfam PPR repeat family 413 461 IPR002885 -
Car04g01622 871 Pfam PPR repeat family 657 705 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Car04g01622 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01622 Car-Chr4:9369166 Car11g00753 Car-Chr11:4366640 1.05E-42 dispersed
Car15g00693 Car-Chr15:3852965 Car04g01622 Car-Chr4:9369166 3.62E-13 dispersed
Car04g00262 Car-Chr4:1478254 Car04g01622 Car-Chr4:9369166 6.35E-47 wgd
Car04g01622 Car-Chr4:9369166 Car05g00866 Car-Chr5:8481211 1.77E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01622 - - bhj:120081514 1477.23