Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01645 ATGGCTAGAACCCCTGTTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGCTTTAGATCGCTTCCCCATCTCTGATTCCGAGGTCCATGTTCTCGCCGTTGATGACAGCCTCGTCGACCGTACAGTAATTGAGCGTCTCCTCCGCCTCACCGCTTGCCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTCTACAATATCTCGGATTGCAAGATGAACCTAATTCCCAAGTTGGTTTTGATGGGTTGAAGGTTGATATGATTATCACCGATTACTGCATGCCCGGAATGACAGGCTACGAATTGTTGAAGAAAATTAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAGCGGCTCCGGGAATATATGGTGGGGGACGAAAAGATTGGAAGTGAAAGGAGTGGGAACAACAAAAGGAAGCTACGAGAACCGTGTGATGAAGCCTCATCATCACCGTCCATTTTATCACCAGCACCATCTTCTGATTCCTCTCCATCACCGTCAGATTCGGTTCAATCCATCACCCCATCATCGTCAGAGCCATCTTCTCCGACGTCCACTCCTCAATCGGACGACTCTAAATGA 687 48.76 MARTPVFSRRRRSDQIDALDRFPISDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDEPNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKIGSERSGNNKRKLREPCDEASSSPSILSPAPSSDSSPSPSDSVQSITPSSSEPSSPTSTPQSDDSK 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9472102 9473496 + Carg01755-RA Car04g01645 147070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01645 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 227 - -
Car04g01645 228 MobiDBLite consensus disorder prediction 163 228 - -
Car04g01645 228 Gene3D - 29 195 - -
Car04g01645 228 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Car04g01645 228 CDD REC_typeA_ARR 31 153 - -
Car04g01645 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 227 IPR045279 GO:0009736
Car04g01645 228 SMART REC_2 29 154 IPR001789 GO:0000160
Car04g01645 228 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Car04g01645 228 MobiDBLite consensus disorder prediction 163 180 - -
Car04g01645 228 SUPERFAMILY CheY-like 29 154 IPR011006 -
Car04g01645 228 MobiDBLite consensus disorder prediction 183 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01645 Car-Chr4:9472102 Car14g00475 Car-Chr14:2529750 2.38E-52 dispersed
Car10g00145 Car-Chr10:689625 Car04g01645 Car-Chr4:9472102 8.35E-65 wgd
Car04g00284 Car-Chr4:1597898 Car04g01645 Car-Chr4:9472102 3.83E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3382 PF00072 Response_reg 2.40E-21 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01645 K14492 - csv:101209506 337.035