Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01650 ATGGATCGAATCTGTGTCGTCCAAGCATATGCTAATTCGACGGCCCTCCGATCTTCTTCCTTCTCCACCGTTGCTTTTTGTGTGAATCATCGTGAGAAGATCCTTTACTTTAGACTCGACATGAACGCCCCTCGCACGTGTTCGCTTTGTGGCAACAATGGCCATAACTCCCGCACGTGTCCGGAGGGAGACGGCGGCGGTGCCAGCGGCGCCGGCGGATTCATGTTGTTCGGGGTCAGGCTGACCACGACCGAGGGAAGTAGCTCGTTTAGAAAGAGTGTTAGTATGAATAATCTGTCCCAGTTCGATCAGCCTCTAAGTCAGGACTCCAACAACGCCGATGCCGGATATGCTTCCGACGACGTCGTTCACCCATCCGACCGTTGCCGCGGCCGAAAAAGAGGGATTCCGTGGACAGAGGAAGAACATCGGCTGTTCTTGTTGGGATTACAGAAGGTTGGGAAAGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACGCCGACTCAGGTGGCTAGTCATGCTCAGAAATACTTCCTCCGCCGGAATAATTTCAATCGGAGACGCCGTAGATCCAGCCTTTTCGACATCACCACTGACACTTTCCCGAGCTCATCCATGGAAGACGATTTGGTATTTTCCGGCCACGAGGCTCTGCCGCCACCGTTACCACCATCGCAGCCGCTAAAAGACAACAAACCCGGAAATTTCCTACTCAAAATTCATCCAATGAAACCACTTCCTCCCACCGGCGATGACAGCAACGCCGAGAACACAATCAGTTCCAAAATCCTTCGTCCAATACCAATGCTTCCTCTGTCTCCATACCCAAAATTCGCTCAATTAAACATTAACGACAGAACGCCGGAAGACCCTTTGCCTCTGACTTTGAAGCTCTCTACTTCACACCCGGAGGCACAGTCTCCGACAGCGGCTTCACAGTCGTCCGGCAATTTCCAGACAATGTCCGGCGGCGGAGACAGTATCGACATTGTCAGTGTTGCTTGA 1017 52.02 MDRICVVQAYANSTALRSSSFSTVAFCVNHREKILYFRLDMNAPRTCSLCGNNGHNSRTCPEGDGGGASGAGGFMLFGVRLTTTEGSSSFRKSVSMNNLSQFDQPLSQDSNNADAGYASDDVVHPSDRCRGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTDTFPSSSMEDDLVFSGHEALPPPLPPSQPLKDNKPGNFLLKIHPMKPLPPTGDDSNAENTISSKILRPIPMLPLSPYPKFAQLNINDRTPEDPLPLTLKLSTSHPEAQSPTAASQSSGNFQTMSGGGDSIDIVSVA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9512870 9514680 + Carg01750-RA Car04g01650 147075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01650 338 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Car04g01650 338 MobiDBLite consensus disorder prediction 303 330 - -
Car04g01650 338 MobiDBLite consensus disorder prediction 101 115 - -
Car04g01650 338 MobiDBLite consensus disorder prediction 286 338 - -
Car04g01650 338 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Car04g01650 338 MobiDBLite consensus disorder prediction 101 128 - -
Car04g01650 338 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Car04g01650 338 MobiDBLite consensus disorder prediction 218 239 - -
Car04g01650 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Car04g01650 338 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01650 - - - csv:101207806 451.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01650 Car-Chr4:9512870 Car06g00710 Car-Chr6:4352892 1.86E-56 dispersed
Car10g00150 Car-Chr10:714485 Car04g01650 Car-Chr4:9512870 1.20E-44 wgd
Car11g00122 Car-Chr11:686196 Car04g01650 Car-Chr4:9512870 1.14E-43 wgd
Car13g00754 Car-Chr13:8546639 Car04g01650 Car-Chr4:9512870 2.12E-44 wgd
Car18g00134 Car-Chr18:717104 Car04g01650 Car-Chr4:9512870 3.20E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3384 PF00249 Myb_DNA-binding 2.00E-10 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01650 Car_Chr04 FPKM 15.18254 16.14834 29.226 26.717119 14.877851 16.57962 15.19402 17.416792 18.134279 18.827311