Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01654 ATGGGTGCCTGCGTTTCCACGCCGGAGGGCTGTGTCAGAGCCAAATTTAAGAAGTCTTCCAAGAGGAAGAACCGCCGGAGAAGGAGGAAAGCTTCCAAAACGACCGCAATTTCTACCCTCTCTGATGGATCGCGCCGCTCCAATCCGATTGATCACCGCTCCTTTTCCAATCCCACTTTCCAAGCTGGAAGTTTTGATGAGGCCTGGTTTGATACAGTTGCAAAATTTGAATCGGATTGTGATGAAGATTACCAAAGTGTTCCTGAAGACATACAGTCAATTAATAGCTTTGAAGGTGCATCAACGTCAAGCGTTTCGTCTTCTGGAGATGCTAATCATGGAGATCTTCATGTGAATCGACATAGCGCGACCACGGATCAGATTCATAGACCAGGAAATTCAGGAAGAGTACATTCTGTGAGCCAAGTTGCAAGGGATTCACATTCTCAGGCAATGAATCCAGATGATGCAGAACCCCAACTTAAGGGTTATGGACACTCGAGCAAGGCGAACGAACCGGTATTCGTCGACGAGATCTCCTCCACTGCTGGTGAAAGCTCTGCCAAAGACGTTGGAGTATTGGATAATTGTGGGATTTTACCAAGCAACTGCTTGCCTTGTCTTGCATCAACAATGAACTCTGTTGAAAAGAGAAAATCACCAAGTTCTAGTCCTCCAAGTGGACTGAAAAAGGCAGCCTTGAAACTGTCGTTCAAATGGAAAGAAGGAAACCCCAATGCTGCTTTATTTTCATCGAAAGCGCTTCTACGAAGACCTATAGCAGGTTCTCAAGTACCCTTTTGCCCAGCTGAAAAGAAAATGCTAGATTGTTGGTCATATATTGAGCCAGATAGTTTTAAAGTTCGGGGAGTAAACTATGCAAAGGACAAGAAGAAAGAGTTTGCTCCCAGTCATGCTGCTTACTGTCCATTTGGAGTTGATGTGTTCTTGTCCCATCGGAAAGTGGATCACATCGCTCGATTTGTCGAACTTCCTGTGGCTAATTATTCTGGGAAACTTCCACCTATCCTTGTCGTGAATGTTCAGATTCCATTGTATCCTGCAGCAATTTTTCATGGAGATACCGATGGAGAAGGGATGAGTATCGTCTTGTACTTTAAGCTTTCTGATACATATGCCAAGGAACTTACATCTCATTTTCAAGAAAATATCAGGAAGCTGATTGATGATGAAGTTGAAAAGGTGAAGGGTTTTCCAGTAGACACTGTAGTACCCTTTAGGGAAAGATTGAAAATTTTGGGGCGAGTTGCAAACGTGGAGGATCTTTCAATGAGCACTGCACAGCGGAAGCTTATGCAGGCTTACAATGAAAAGCCCGTCCTCTCGCGTCCCCAACATGAATTTTACTCGGGGAACAAATCTGAAGAACTGCCAGAGGAGATCTTATGTTGTATTAGACTAAACGGAATTGATTATGTAAATTACAAGCAGTTGGGGATGGGTCAAGAGATCCTGTAA 1479 44.02 MGACVSTPEGCVRAKFKKSSKRKNRRRRRKASKTTAISTLSDGSRRSNPIDHRSFSNPTFQAGSFDEAWFDTVAKFESDCDEDYQSVPEDIQSINSFEGASTSSVSSSGDANHGDLHVNRHSATTDQIHRPGNSGRVHSVSQVARDSHSQAMNPDDAEPQLKGYGHSSKANEPVFVDEISSTAGESSAKDVGVLDNCGILPSNCLPCLASTMNSVEKRKSPSSSPPSGLKKAALKLSFKWKEGNPNAALFSSKALLRRPIAGSQVPFCPAEKKMLDCWSYIEPDSFKVRGVNYAKDKKKEFAPSHAAYCPFGVDVFLSHRKVDHIARFVELPVANYSGKLPPILVVNVQIPLYPAAIFHGDTDGEGMSIVLYFKLSDTYAKELTSHFQENIRKLIDDEVEKVKGFPVDTVVPFRERLKILGRVANVEDLSMSTAQRKLMQAYNEKPVLSRPQHEFYSGNKSEELPEEILCCIRLNGIDYVNYKQLGMGQEIL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9540352 9544758 + Carg01746-RA Car04g01654 147079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01654 492 MobiDBLite consensus disorder prediction 123 169 - -
Car04g01654 492 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 278 450 IPR009769 -
Car04g01654 492 MobiDBLite consensus disorder prediction 15 61 - -
Car04g01654 492 MobiDBLite consensus disorder prediction 34 61 - -
Car04g01654 492 MobiDBLite consensus disorder prediction 125 149 - -
Car04g01654 492 MobiDBLite consensus disorder prediction 16 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01654 - - - csv:101206832 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01654 Car-Chr4:9540352 Car15g00251 Car-Chr15:1378438 3.28E-89 dispersed
Car15g00287 Car-Chr15:1552770 Car04g01654 Car-Chr4:9540352 3.46E-140 wgd
Car04g00297 Car-Chr4:1662801 Car04g01654 Car-Chr4:9540352 0 wgd
Car04g01654 Car-Chr4:9540352 Car04g02641 Car-Chr4:20577561 4.11E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g817 . . . . . . Bma14g01758 . . . . . . . Sed06g1586 . Cpe01g01427 Bhi07g01643 Tan04g1149 Cmetu10g1826 Lac13g0255 Hepe10g1694 . . Cla05g02494 Cam05g2679 Cec05g2713 Cco05g2748 Clacu05g2681 Cmu05g2536 Cre05g2651 Cone13ag0994 . . . . Csa05g02391 Chy10g00953 . . Blo11g00893 . . . . . . . Cmo04g02874 . Cma04g01613 . Car04g01654 . Cpe13g00933 . . . . . . . . . . . . . . . . . Chy09g00284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007653 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01654 Car_Chr04 FPKM 1.622502 1.88839 3.578034 3.227226 11.168831 11.08913 13.026036 3.838808 3.629343 3.319487