Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01672 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGAAGCAGAAGAACAACAAGGAACAGATTGAAAACTTGGAAGAGGAGACTGGTTGTTGGATTGCTTTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATTAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGAGATATCTTCAACAGCCACAAGTATGAGTAATGCAGAGAGTACTTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATTTCGCCCCATCTACGGAATTTTTCATTTAATGATCTTAAGTTGGCTACAAGGAACTTTAGACCCGAGAGTCTACTCGGTGAGGGTGGTTTTGGTTGTGTTTTCAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGTACAGGACTCACTGTTGCTGTTAAAACGCTCAACCACGATGGTCTTCAGGGCCATAAAGAATGGATGGCTGAAGTGAACTTTCTTAGTGATCTCAAACATCCGAACTTGGTCAGACTTATCGGTTACTGCAACGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCTCTTCCATGGTCTATTAGGATGAAAATTGCTCTAGGTGCTGCCAAGGGCCTTGCTTTTCTTCATGAGGAAGCACAAAGACCTGTGATATATCGTGATTTTAAAACGTCCAACATTCTATTAGATGCCGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCTGATGGAGATAAAACTCATGTCTCTACTCGTGTGATGGGAACGTATGGCTACGCAGCTCCAGAATACGTAATGACTGGACATCTGACATCGAGGAGTGATGTTTACAGTTTTGGAGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAACATAACCTTGTGGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGGCATTTCTCAATAAAAGGTGCCCAAAAGGCAGCACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGATCAGACCTCTAATGAGTGAAGTTGTAGAAGCCTTGAAGCCCCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCGAGCCCAATGGCGAGAAATGGCTACCATGTTCTCGAAACGTCGCGGTAG 1362 43.61 MEVIAEDGKVESREVRESKGKKKKQKNNKEQIENLEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPREISSTATSMSNAESTSSTSKLEEELKISPHLRNFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAAQLAAQCLSRDQKIRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHVLETSR 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9621583 9624352 + Carg01727-RA Car04g01672 147097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01672 453 Pfam Protein tyrosine and serine/threonine kinase 136 412 IPR001245 GO:0004672|GO:0006468
Car04g01672 453 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01672 453 MobiDBLite consensus disorder prediction 1 18 - -
Car04g01672 453 MobiDBLite consensus disorder prediction 1 31 - -
Car04g01672 453 Coils Coil 15 38 - -
Car04g01672 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Car04g01672 453 MobiDBLite consensus disorder prediction 70 104 - -
Car04g01672 453 MobiDBLite consensus disorder prediction 70 109 - -
Car04g01672 453 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00256 Car-Chr3:3730851 Car04g01672 Car-Chr4:9621583 1.05E-62 dispersed
Car04g01672 Car-Chr4:9621583 Car11g00409 Car-Chr11:2296648 0 dispersed
Car04g02652 Car-Chr4:20651940 Car04g01672 Car-Chr4:9621583 9.93E-97 dispersed
Car07g00977 Car-Chr7:5552486 Car04g01672 Car-Chr4:9621583 2.31E-117 dispersed
Car07g01177 Car-Chr7:7117372 Car04g01672 Car-Chr4:9621583 1.54E-48 dispersed
Car18g01084 Car-Chr18:10965729 Car04g01672 Car-Chr4:9621583 1.44E-110 dispersed
Car15g00280 Car-Chr15:1520400 Car04g01672 Car-Chr4:9621583 4.92E-137 wgd
Car18g01083 Car-Chr18:10963887 Car04g01672 Car-Chr4:9621583 8.95E-119 wgd
Car04g01672 Car-Chr4:9621583 Car04g02651 Car-Chr4:20649534 9.43E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88818 PF07714 PK_Tyr_Ser-Thr 8.10E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01672 - - csv:101203209 822.002