Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01676 ATGGCTATGCAAACTGGAGTAGGCCTTTCGAAGATTCTGATTCTTGTTGGAGCTGGATACTCTAGTACGATCCTGCTTAAGAATGGTAAATTATCGGATGTGTTGGGTGAACTTCAGTCCTTGGTGAAGGGCTTAGAGAAGTCTGGGGAACAATATGTGGGTGATTCTGACTACTCTGATGCCATTGCTGCTCAGGTGCTGATAAAATATATGCATTTTAAAGAGGTATTGTCCGATAGTAATGTATCATCTTTCATAATTCCAGCTGCTACTTTGGGTGCCTTGGGATATGGATACATGTGGTGGAAGGGGTTTTCATTCTCAGACCTTATGTATGTTACAAAGCGCAATATGGCTAATGCTGTCTCAAACTTAACTAAACATTTGGAGCACGTATCAGAGGCCCTTGCTGCAACAAAGAGGCATTTGACACAGCGGATTGAGAACTTGGATGATAAGATGTTGAAGCAGAATGAACTCTCGAAATTGATCAAAGAAGATCATTACAGTACAAAATAA 519 40.85 MAMQTGVGLSKILILVGAGYSSTILLKNGKLSDVLGELQSLVKGLEKSGEQYVGDSDYSDAIAAQVLIKYMHFKEVLSDSNVSSFIIPAATLGALGYGYMWWKGFSFSDLMYVTKRNMANAVSNLTKHLEHVSEALAATKRHLTQRIENLDDKMLKQNELSKLIKEDHYSTK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9642090 9644630 - Carg01723-RA Car04g01676 147101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01676 172 Coils Coil 133 160 - -
Car04g01676 172 Pfam Protein of unknown function (DUF1664) 81 167 IPR012458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01676 - - - mcha:111019198 273.092
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01676 Car18g01080 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01676 Car-Chr4:9642090 Car07g00614 Car-Chr7:3095936 8.19E-46 dispersed
Car04g01676 Car-Chr4:9642090 Car18g01080 Car-Chr18:10947144 7.80E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g858 . Blo16g01130 . Bda11g01232 Bpe13g01429 . . . Cmo04g01713 Cmo18g01196 . Cma18g01171 . Car18g01080 . Cpe09g00156 Cpe01g01446 . . . . . . . . . . . . . . Cone13ag0977 Cone19ag0969 . . . . . . . . . Bda11g01232 . . . Bma06g00661 . . . Cma04g01635 . Car04g01676 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004024 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01676 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 2.291068 2.419034 2.678113 0.0 0.0 0.0