Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01678 ATGAATCGCGAAATAGTGCGATTGGTGGCCAAAGGATTTTACGTTGAAGCATTCTCCATGTACTCGCAGCACCACTCAGCCTCCCTTAGTTCTTACAATTTCATTTTTCCTCCTCTCTTCAAAGCGTGCGCAAAGCTTAACTCGGTTCCACAAGGCCAAATGCTGCATACCCACTTGATGAAAGTGGGGTTTTCAGCAGACGTCTATGCAGCAACAGCCCTCACGGATATGTATTTGAAGCTTTTTCATGTTGATGACGCTCTGAAAGTGTTCGACGAAATGCCCCACAGAAACACGGCGTCTTTAAACGCAATGATTTCTGGGTTTCTGTTGAATGGTTTTCGTGGAGAAGCGTTACGGATGGTTGAGCTTGTGAATCGCGGTTCATTAAAGCCCAATTCAATTACCATTGTTAACTTGCTGTCAGCATGCGCAAGTGTTGCTCATGGGATGCAAGTACATTGTTGGGCTATCAACCTGGGTTTTCAAATGGACGTATATGTTGCTACGGCGCTTTTGACGATGTATTGTACTTGTGAAAAAATGGGTTTCGCTGCAAAGGTATTCCAAGAGATGTCGAACAAAAACGTGGTGAGTTTTAATGCTTATATTTCAGGGCTTCTACTGAATGGCATGCCCCGTATGGTAATTGATGTATTTAAGAGCATGATGGAATGCCCACCTGGGAAATCGAATTCCGTCACACTGGTTTCTGTCCTTTCTGCTTGTTCTAGTCTTTCACATCTTGGATTTGGTAGGCAGGTTCATGCACTCACTGTTAAAATTGATAATGATGATGTAATGGTTGGAACTGCACTGGTGGACATGTATTCTAAATGTGGGGCTTGGCAGTGTGCACACAAGGTATTCAACGAGCGGAAAGGAACCAGTAACTTATTTACTTGGAATTCATTGATTGCAGGAATGATGTTAAATGAACAGAGTGAAATTGCAGTGGAACTTTTTGAATCGTTGGAGTCCCATAAATTGCAGCCAGATTCAGCTACCTGGAACTCAATGATAAGTGGACATGCCCGTTTGGGTCAGCCGGTGAAGGCCTTTAAGTACTTTCATAGAATGCAATCGGCTGGCACAGTCCCTAGTTTAAAATCTCTCACTAGTCTTTTATCCATTTGTTCAGACTTGTCTGCATTGCGACATGGCAAAGAGATCCATGCCCAAGTAACTAAAAGCTTCATTCATATGGACGTGTTGCTTGCCACGGCACTTATTGACATGTACATGAAATGTGGATGTCTTTCTTCAGCACAGAGACTCTTCGATCAATTTGGCTTCAAACCAAAAGATACAATATTTTGGAACGCAATGATCTCAGGTTACGGGAACAATGGGGAGAACAAATCTGCGTTTGATATATTTGATCGGATGCTGGAAGAAGGAGTACATCCAAATGCGGCCACATTTACCAGCCTCTTATCTATTTGCAGTCATTGTGGTCAGGTTGACAAAGGTTGGCAGTTTTTCAAGATGATGAACAAGAAATACGACCTGCAGCCAGATCGTGATCATTATAACTGCATGATAGACATTTTGGGTAGAGCCGGCCAGTTGGGGAAAGCTCGAAAATTGTTGGAAGAATTGCCAGAGCCTTCTATGTCTTCTCTTGCTTCTTTGCTTGGTGCTTGTAGCTTGCACAGAGATTCTAAACTGGGCGAAGAAATGGCTTCAAGAATTTCAGAATTAGAGCCTAAGAATCCACTTCCATTTGTTATCTTATCCAATATATATGCTGAGCTTGGAAGGTGGAAAGATGTTGAAAGGGTTAGAGAAATGATGAATGACAAAGGATTGAGAAAGCCATCTGGCCTTAGTTCAATAGAATGA 1845 42.49 MNREIVRLVAKGFYVEAFSMYSQHHSASLSSYNFIFPPLFKACAKLNSVPQGQMLHTHLMKVGFSADVYAATALTDMYLKLFHVDDALKVFDEMPHRNTASLNAMISGFLLNGFRGEALRMVELVNRGSLKPNSITIVNLLSACASVAHGMQVHCWAINLGFQMDVYVATALLTMYCTCEKMGFAAKVFQEMSNKNVVSFNAYISGLLLNGMPRMVIDVFKSMMECPPGKSNSVTLVSVLSACSSLSHLGFGRQVHALTVKIDNDDVMVGTALVDMYSKCGAWQCAHKVFNERKGTSNLFTWNSLIAGMMLNEQSEIAVELFESLESHKLQPDSATWNSMISGHARLGQPVKAFKYFHRMQSAGTVPSLKSLTSLLSICSDLSALRHGKEIHAQVTKSFIHMDVLLATALIDMYMKCGCLSSAQRLFDQFGFKPKDTIFWNAMISGYGNNGENKSAFDIFDRMLEEGVHPNAATFTSLLSICSHCGQVDKGWQFFKMMNKKYDLQPDRDHYNCMIDILGRAGQLGKARKLLEELPEPSMSSLASLLGACSLHRDSKLGEEMASRISELEPKNPLPFVILSNIYAELGRWKDVERVREMMNDKGLRKPSGLSSIE 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9647376 9649220 - Carg01721-RA Car04g01678 147103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01678 614 Pfam PPR repeat 72 97 IPR002885 -
Car04g01678 614 Pfam PPR repeat 198 226 IPR002885 -
Car04g01678 614 Pfam PPR repeat 170 197 IPR002885 -
Car04g01678 614 Pfam PPR repeat 510 535 IPR002885 -
Car04g01678 614 Pfam PPR repeat 408 429 IPR002885 -
Car04g01678 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 501 IPR002885 -
Car04g01678 614 Pfam PPR repeat family 435 482 IPR002885 -
Car04g01678 614 Pfam PPR repeat family 298 346 IPR002885 -
Car04g01678 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Car04g01678 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Car04g01678 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Car04g01678 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Car04g01678 614 Pfam E motif 552 614 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01678 - - - mcha:111019194 1014.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01678 Car-Chr4:9647376 Car11g00460 Car-Chr11:2542782 2.26E-17 dispersed
Car04g01678 Car-Chr4:9647376 Car17g01117 Car-Chr17:8612112 2.08E-10 transposed
Car04g01678 Car-Chr4:9647376 Car14g00152 Car-Chr14:715992 4.86E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g863 . . . . . Bpe10g00857 . Bma15g00168 Cmo04g01715 . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0966 . . . . . . . . . . . . . . . . . Cma04g01637 . Car04g01678 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015078 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 14
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01678 Car_Chr04 FPKM 3.413793 3.329575 3.807665 4.483276 0.0 0.0 0.874677 1.159596 0.574268 0.988511