Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01684 ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTTCCTTCTTGCACATCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCGTTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTCAACATGGAGCAAGTGAAAACACTAGAGAAAAATTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCAGAACCAAAAGCTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGGTCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATTAAATTGGACATCTCAAGAACACCTGCCATCGACAGCCCTCATCAGCATCAGCACCCAACAAACAGGCCTCTTTTTCCCACGTCTTCCTTGAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCAACTTGATAACAACAACAACCACCACCACCATCATCATCAAATGCCCAAAGAAGAAAACACCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 912 43.97 MTSNGMAFFPANFMLQTSHEDHDHHHHSSPPSLNPILPSCTSQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDPPKQLDNNNNHHHHHHQMPKEENTSLSNMFCGMDDHSGFWPWLEQQHFN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9680977 9682330 - Carg01715-RA Car04g01684 147109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01684 303 MobiDBLite consensus disorder prediction 217 259 - -
Car04g01684 303 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Car04g01684 303 MobiDBLite consensus disorder prediction 176 283 - -
Car04g01684 303 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Car04g01684 303 MobiDBLite consensus disorder prediction 65 85 - -
Car04g01684 303 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Car04g01684 303 Coils Coil 132 180 - -
Car04g01684 303 MobiDBLite consensus disorder prediction 260 275 - -
Car04g01684 303 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Car04g01684 303 MobiDBLite consensus disorder prediction 188 210 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01684 Car18g01074 CCT
Car04g01684 Car18g01074 ECH
Car04g01684 Car15g00277 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01684 Car-Chr4:9680977 Car16g00757 Car-Chr16:4792081 1.07E-37 dispersed
Car06g00370 Car-Chr6:2036782 Car04g01684 Car-Chr4:9680977 1.71E-29 dispersed
Car13g00767 Car-Chr13:8605745 Car04g01684 Car-Chr4:9680977 2.17E-35 wgd
Car15g00277 Car-Chr15:1511662 Car04g01684 Car-Chr4:9680977 7.09E-75 wgd
Car18g01074 Car-Chr18:10902709 Car04g01684 Car-Chr4:9680977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3387 PF00046 Homeodomain 3.00E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01684 K09338 - csv:101221595 533.487