Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01690 ATGGATGGTGAAAATGGGATCCGGAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAGGAAGAACACCCATGTTCCACCTCCGCAGACAACGGAACAACAACAACAACCACCACCACCACGACCACGACGGTGAATCCGAATCTTCAATCTTCTTCACCTAAGAAGCCACCTCCCAAAAGGGCTACCACCAAAGATCGTCACACGAAAGTCGATGGTCGTGGTCGGAGGATTCGGATGCCGGCCCTTTGCGCTGCTAGGGTTTTTCAGCTTACTAGAGAGCTTGGTCATAAGTCCGACGGTGAAACTATAGAGTGGCTGTTGCAACAGGCGGAGCCGGCTGTCATCGCCGCCACGGGTACAGGTACCATTCCGGCTAATTTCACCTCGCTTAATATTTCTCTCCGTAGTTCCGGCTCCACCGTTCTTGCTCCTTCTCACCTCCGGACGAGCTATTTCAGTCCGACACAATTCGCCGTCAGAACAAGATCTGATCTTTGGGATAGGAGTAATAATAATAATAATCATAATCATAATAATAATAATAATACTCTGGTGGATGATTCTTCTACATTTTTTAATTTCAATTCTCCCAATTACATCAACGCATTCAAGCACGATCAGGGTGGGATTGATGTAACCGACGCTGGAAAGAAACGGCGGCCGGAGAATTCGGAATCGTCATCGGAGAATCCGGTGGGGAATTATTTGGTTCAATCGAGTACCGGGTCGATTCCGGCGAGTCACAGCACTCCGGTGCCGGCAACATTTTGGATGGTGACGAATCCGAGCAATCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGTAACAGCAGCATGTTTAGAGGGGGAAGCGGCGGCGGTGGCGGTGGTGGTGGCGGGGGATTTCATTTCATGAATCTTCCACCACCAATGGCTCTTTTGCCAACTGGGCAACAAGTGGGGTCAGGGATCGGGGGTGGTAGCGGTGGTCCGGCGACCGACACCCATTTGGGGATGTTGGCGGCTCTTAGTGCTTATAGGACGATACCGGGTGTGTCAATTTCAGAATCTCCGACAAGAGGAGCGGCGGCTGTTCATCCAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG 1140 50.09 MDGENGIRRPNFPLQLLEKKEEEHPCSTSADNGTTTTTTTTTTTTVNPNLQSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVLAPSHLRTSYFSPTQFAVRTRSDLWDRSNNNNNHNHNNNNNTLVDDSSTFFNFNSPNYINAFKHDQGGIDVTDAGKKRRPENSESSSENPVGNYLVQSSTGSIPASHSTPVPATFWMVTNPSNQASDPMWTFPSVSNSSMFRGGSGGGGGGGGGGFHFMNLPPPMALLPTGQQVGSGIGGGSGGPATDTHLGMLAALSAYRTIPGVSISESPTRGAAAVHPGGNEAHDSTSNRDQS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9711586 9712725 - Carg01709-RA Car04g01690 147115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01690 379 MobiDBLite consensus disorder prediction 207 249 - -
Car04g01690 379 MobiDBLite consensus disorder prediction 28 59 - -
Car04g01690 379 MobiDBLite consensus disorder prediction 1 73 - -
Car04g01690 379 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
Car04g01690 379 MobiDBLite consensus disorder prediction 228 249 - -
Car04g01690 379 MobiDBLite consensus disorder prediction 212 227 - -
Car04g01690 379 MobiDBLite consensus disorder prediction 352 379 - -
Car04g01690 379 Pfam TCP family transcription factor 64 183 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01690 - - - cmax:111485089 640.188
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01690 Car18g01068 CCT
Car04g01690 Car18g01068 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01690 Car-Chr4:9711586 Car04g01863 Car-Chr4:10791537 3.55E-45 dispersed
Car10g00176 Car-Chr10:839601 Car04g01690 Car-Chr4:9711586 4.24E-94 wgd
Car11g00147 Car-Chr11:831723 Car04g01690 Car-Chr4:9711586 1.48E-80 wgd
Car13g00957 Car-Chr13:9659431 Car04g01690 Car-Chr4:9711586 9.82E-54 wgd
Car18g01068 Car-Chr18:10862749 Car04g01690 Car-Chr4:9711586 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00738 . 31 253 TCP Transcription Factor Family AT5G23280 63.5 1.8e-65 246.5
Car04g02171 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 2.6e-64 242.7
Car04g01351 . 36 250 TCP Transcription Factor Family AT5G23280 61.4 9.7e-64 240.7
Car18g00741 . 33 230 TCP Transcription Factor Family AT5G23280 58.5 9.4e-59 224.2
Car17g00004 . 65 337 TCP Transcription Factor Family AT2G45680 52.2 7.9e-59 224.9
Car18g01068 CCT,ECH 58 148 TCP Transcription Factor Family AT3G47620 92.3 4.5e-41 166.4
Car04g01690 CCT,ECH 62 156 TCP Transcription Factor Family AT3G47620 88.7 5.0e-40 162.9
Car13g00957 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.3e-39 160.2
Car04g01863 . 140 222 TCP Transcription Factor Family AT3G47620 90.4 1.5e-36 151.4
Car04g01863 . 140 232 TCP Transcription Factor Family AT1G69690 82.8 1.7e-36 150.6
Car14g00666 . 1 319 TCP Transcription Factor Family AT3G27010 57.1 5.7e-61 231.9
Car11g01298 . 38 276 TCP Transcription Factor Family AT3G27010 56.7 6.7e-54 208.4
Car17g01312 . 42 259 TCP Transcription Factor Family AT3G27010 53.2 5.5e-48 188.7
Car15g00738 . 1 252 TCP Transcription Factor Family AT5G08330 60.9 2.4e-64 242.7
Car04g02171 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 7.9e-63 237.7
Car04g01351 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 1.3e-60 230.3
Car18g00741 . 10 228 TCP Transcription Factor Family AT5G08330 57.4 3.7e-60 228.8
Car11g00191 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 58.0 4.1e-39 159.5
Car20g00876 . 39 150 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3388 PF03634 TCP 1.20E-37 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01690 Car_Chr04 FPKM 2.941244 4.943547 1.004131 1.730827 2.610418 2.468702 2.717162 0.0 0.0 0.0