Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01702 ATGGCTTCCGACCCAGTCGCTTCTGAGCTTTCTTCTGCCTTCGAAAGCCTGGTTTTCATCAACAGAGACATCTCTCCCATCGCACCCCTTTTCTTGGGTTTCGCCTCCGTCATCCGTTCAGCCGACCCTCAATCCCCAAATCCAGAAATTCAAACAATACCCACTTTGCCGAACCGATTCATCTTCTTTAATCCCTTTCCCCCTCAATTGATGGTGATCCAAGCCACTCCCAAGGAAGGCCAACCCCCTGCCTCTAAAGCCTCCATCAAAGCCATGCCCTCTCTCCCTGTCTCTGAACTTACTGAATGTGTGATTTGTTTAGAGGAGATTGAAGCGGGTGACCTCGCCAAACAAATGCCCTGTTCCCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTATTTGTAGATATCAGATGCCAATTGACGATGAAGATGAAGGAAAGAAGGTTGATGAAGAAGGGTCAGAGAGGAGAGGAGAAAGGGAGATTTGGGTGAGTTTCTCTTTTGATAATGTTACCAGAAATGGGGAATCTGTTCAAACCCCCCCTTCAACATATTCTGATCATTCTTTTGTACAGTGA 606 47.19 MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRFIFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNVTRNGESVQTPPSTYSDHSFVQ 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9775204 9775809 + Carg14403-RA Car04g01702 147127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01702 201 Pfam Ring finger domain 102 144 IPR001841 -
Car04g01702 201 SUPERFAMILY RING/U-box 102 150 - -
Car04g01702 201 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Car04g01702 201 CDD RING-H2_PA-TM-RING 102 144 - -
Car04g01702 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Car04g01702 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MPSR1 74 160 - -
Car04g01702 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 160 - -
Car04g01702 201 SMART ring_2 103 143 IPR001841 -
Car04g01702 201 MobiDBLite consensus disorder prediction 181 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01702 - - - cmos:111458226 391.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01702 Car18g01056 CCT
Car04g01702 Car15g00265 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01702 Car-Chr4:9775204 Car02g00960 Car-Chr2:6762800 3.92E-23 dispersed
Car01g00434 Car-Chr1:2488760 Car04g01702 Car-Chr4:9775204 5.44E-46 wgd
Car13g00774 Car-Chr13:8645282 Car04g01702 Car-Chr4:9775204 1.09E-15 wgd
Car15g00265 Car-Chr15:1452823 Car04g01702 Car-Chr4:9775204 5.41E-32 wgd
Car18g01056 Car-Chr18:10804267 Car04g01702 Car-Chr4:9775204 1.09E-97 wgd
Car18g00086 Car-Chr18:456093 Car04g01702 Car-Chr4:9775204 2.94E-24 wgd
Car04g01702 Car-Chr4:9775204 Car05g00775 Car-Chr5:6032145 1.13E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g922 . . . . . Bpe10g00877 Bma14g01646 . Cmo04g01742 Cmo18g01167 . Cma18g01147 . Car18g01056 Sed08g1981 Cpe09g00183 Cpe01g01470 Bhi07g01557 Tan04g1072 Cmetu10g1747 Lac13g0324 Hepe10g1749 . . Cla05g02437 Cam05g2622 Cec05g2655 Cco05g2693 Clacu05g2624 Cmu05g2478 Cre05g2591 . . . . Lsi04g00415 Csa05g02459 Chy10g01009 Cme10g00409 . . . . . . . . . . . . . Car04g01702 Car15g00265 Cpe13g00954 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003724 2 1 0 1 1 1 4 1 1 1 1 1 1 1 1 3 1 2 3 1 1 1 2 2 2 3 3 1 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01702 Car_Chr04 FPKM 3.793169 3.626106 7.631421 3.7568 2.343278 4.751429 3.777349 2.920871 4.165318 2.908467