Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01707 ATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCGTAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTGGGGCTTGTGGGTATGGTAACTTATACAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGTTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGTATAAGATTCACCATCAATGGGCACTCCTACTTCAACCTGGTTCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCTAGGAACTGGGGACAGAACTGGCAGAGCAACAGTTACCTCAATGGCCAAAGCCTGTCGTTCAAGGTCACCACCAGCGACGGCCGCACAGTCATCGCTAACAACGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACATACAGTGGTGCCCAATTCTAA 747 51.14 MASVLVFLAAFYAVVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVIANNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9792612 9794086 - Carg14398-RA Car04g01707 147132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01707 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Car04g01707 248 PANTHER EXPANSIN 7 248 - -
Car04g01707 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Car04g01707 248 Gene3D - 12 152 IPR036908 -
Car04g01707 248 Gene3D - 156 248 IPR036749 -
Car04g01707 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Car04g01707 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Car04g01707 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Car04g01707 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Car04g01707 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Car04g01707 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Car04g01707 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Car04g01707 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Car04g01707 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Car04g01707 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Car04g01707 248 SUPERFAMILY Barwin-like endoglucanases 8 174 IPR036908 -
Car04g01707 248 SMART dpbb_1 61 146 IPR007112 -
Car04g01707 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Car04g01707 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01707 Car18g01051 CCT
Car04g01707 Car18g01051 ECH
Car04g01707 Car15g00262 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00576 Car-Chr2:4394601 Car04g01707 Car-Chr4:9792612 6.16E-128 dispersed
Car04g00102 Car-Chr4:560825 Car04g01707 Car-Chr4:9792612 1.24E-105 dispersed
Car04g00992 Car-Chr4:5714487 Car04g01707 Car-Chr4:9792612 3.16E-143 dispersed
Car04g01707 Car-Chr4:9792612 Car15g00175 Car-Chr15:932957 5.18E-141 dispersed
Car07g00978 Car-Chr7:5558020 Car04g01707 Car-Chr4:9792612 1.79E-125 dispersed
Car13g00092 Car-Chr13:680431 Car04g01707 Car-Chr4:9792612 3.37E-127 dispersed
Car20g00342 Car-Chr20:1954549 Car04g01707 Car-Chr4:9792612 2.60E-127 dispersed
Car01g00733 Car-Chr1:4473173 Car04g01707 Car-Chr4:9792612 1.00E-113 wgd
Car01g00437 Car-Chr1:2498011 Car04g01707 Car-Chr4:9792612 4.48E-149 wgd
Car10g00188 Car-Chr10:902985 Car04g01707 Car-Chr4:9792612 5.34E-146 wgd
Car11g00157 Car-Chr11:869855 Car04g01707 Car-Chr4:9792612 7.49E-148 wgd
Car15g00262 Car-Chr15:1437362 Car04g01707 Car-Chr4:9792612 1.66E-138 wgd
Car18g01051 Car-Chr18:10776371 Car04g01707 Car-Chr4:9792612 1.50E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01707 - - csv:101217956 496.123