Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01715 ATGAAGTTCGGCAAGCAATTTGCCGCTCAGATGGTTCCTGAATGGCAGCAAGCCTACATGGATTACGAGTTCCTCAAGTCCCTCTTGAAGCAAATCGACACCTTCAACAAAGCCCACGCTAGAAACCACCCCGTAACCGACTCTGCCCAGCTCAGACGGACCCTCAGCCTCTACCGGGCTTTCAGCGGCCTCACCCTACACCACAACCACAGCCATGGTCACGGCCACGCCCACGGCCATGGCCATAATAGCCACCCTACAAGTCCAGGATCTCCGCAGGATGCGGTGGAGGAGCAGGCTATATTGGTGAATGCGGTGAGTCGGGACGGGACGAGGAAGTATCGGACGACGTTTTTGATGGCGGATGAGGAAGGGGGAGAGTATGAGTTGGTGTACTTTAGGTCGTTGGATAGAGAGTTTAATAAAGTGGAGAAGTTTTATAAGTCGAAAGTGGAGGAAGTTGTGAAGGAGGCGAGTGTGTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATCAAAGTGGAGAATCCAAAGGGTGTTTGGGATTTCTCCGGCGACCGGTCGGAGGAGATATCAAAGCTGGCTACTGATATTGCTGTTTCTACTGCTGCTTTGTCATCTTCCACTCCTTCTGGGGTCCGAGCTAGCAGACGGGTTCATATAGCAATGGACGCCATAGAAGAAGGTGGGTCGAGCCACAAAGAAAGTCATAAACCAGATAGTGAATCAAAAGAAGAAAAAGATGGAAAGGAAGAGAAGAACACAAAGGATGAAGAAGGGAAAGAAACAAAGATGAAGGCCAACAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAACACAACTCAAGAGACACCAATATCCACCATTAAAGGCCTTTTCAACTTCCCCAAGAACTCAGAACTTCAATTCAACAGAGAAAATCTCAACAAAATTGAGAACCAACTCAAGAGGGCTTTTGTTGTGTTTTACCACAAACTCAGGCTGCTAAAAAGCTTCAGCTTCTTGAATACTCTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACTTCAAGAAATGCAGGAAAGTCATACATGAAGATGGTGGACAGCTCTTATCTTGGGAGTTCTGATGAGGTTTCCAAGCTAATGGAGAGGGTGGAAGCTGCATTTATCAAACACTTCTGCAATGCTAATCGGACCAAAGGAATGAACATCTTGAGACCCAAAGCAAAGAAAGAAAGACATAGAATTACATTTTCAGTCGGTTTCTTTGCTGGCTGCACTGTAGCTCTTATCGTCGCCCTCGCTTTCGTTACTCGAGCTCGACATTTACTAGACAGAGAAGGCAGCACCCAGTATATGGAAACCATGTTTCCTCTTTACAGCTTGTTTGGATTCGTTGTGTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGCGATACCAAGTGAACTACTCCTTCATATTTGGGTTCAAACAAGGCACTGAGTTGGCCTACCGAGAGGTTCTTTTTCCCAGTTTTGCTGTGGCAACTCTTGCTTTAGCCTGTGTTCTTTCTAACCTTGACATGGAGATGGACCCTGTAACGAAGTCATATCAAGCAGTGACTGAACTTCTTCCTTTGGTTTTGCTCCTTGTTGTGATTGCAGTCTTCTTGTGTCCACTCAACATCTTATATCGTTCGAGTCGCTTGTTCTGCATAAAAACTTTGTACCATTGCATATGTGCTCCCCTTTACACGGTCGTCTTCCCTGATTTCTTTTTGGCAGATCAGTTAACCAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTTTACATTTGCTATTACGGTTGGGGAGATTACAAACATCGACGGGATACTTGTCGAACCAACACTGTATTCAACACTTTCAGCTTCATCATTGCTGTTATTCCATATTTGTCTCGTCTCCTTCAGTGTCTCAGGCGACTGTTTGAGGAGAAAGATACAATGCAGGGATATAACGGAGTGAAGTACTTCTTGACAATTGTAGCTGTTTGCTTGAGGACAGCTTACAGTCTAAACAAGGGAATGACCTGGAAAGTGTTGGCGGCAGTGTTCTCAGCTGTTGCTGCCATTATATGCACGTATTGGGACCTCGCCATCGACTGGGGGCTTTTGCAGCGCCATTCGAAAAACCGATGGCTAAGAGACAAACTACTTGTTGGTCATAACAGTGTATATTTTGTGGCAATGTTCTTGAATGTTTTACTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTCAAGTTCTCCAACCTGCATACAGAAGGTTTGATTACAATAGTGGCCAGCCTTGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAGGTACCGGGCATTTAAATCTGTACCACTGCCTTTCAACTACGATGAAGACGATGACAAAGATGATTAA 2457 44.85 MKFGKQFAAQMVPEWQQAYMDYEFLKSLLKQIDTFNKAHARNHPVTDSAQLRRTLSLYRAFSGLTLHHNHSHGHGHAHGHGHNSHPTSPGSPQDAVEEQAILVNAVSRDGTRKYRTTFLMADEEGGEYELVYFRSLDREFNKVEKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPKGVWDFSGDRSEEISKLATDIAVSTAALSSSTPSGVRASRRVHIAMDAIEEGGSSHKESHKPDSESKEEKDGKEEKNTKDEEGKETKMKANRPPPLELLDRVTMNTTQETPISTIKGLFNFPKNSELQFNRENLNKIENQLKRAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRNAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRITFSVGFFAGCTVALIVALAFVTRARHLLDREGSTQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLFPSFAVATLALACVLSNLDMEMDPVTKSYQAVTELLPLVLLLVVIAVFLCPLNILYRSSRLFCIKTLYHCICAPLYTVVFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRRDTCRTNTVFNTFSFIIAVIPYLSRLLQCLRRLFEEKDTMQGYNGVKYFLTIVAVCLRTAYSLNKGMTWKVLAAVFSAVAAIICTYWDLAIDWGLLQRHSKNRWLRDKLLVGHNSVYFVAMFLNVLLRFAWLQTVLDFKFSNLHTEGLITIVASLEIIRRGIWNFFRLENEHLNNVGRYRAFKSVPLPFNYDEDDDKDD 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9825448 9830741 - Carg14390-RA Car04g01715 147140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01715 818 MobiDBLite consensus disorder prediction 227 275 - -
Car04g01715 818 MobiDBLite consensus disorder prediction 68 94 - -
Car04g01715 818 MobiDBLite consensus disorder prediction 227 269 - -
Car04g01715 818 Pfam EXS family 456 792 IPR004342 GO:0016021
Car04g01715 818 Pfam SPX domain 1 367 IPR004331 -
Car04g01715 818 ProSiteProfiles SPX domain profile. 1 365 IPR004331 -
Car04g01715 818 ProSiteProfiles EXS domain profile. 624 818 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01715 - - - csv:101215812 1391.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01715 Car-Chr4:9825448 Car12g00707 Car-Chr12:5244171 0 dispersed
Car15g00256 Car-Chr15:1401596 Car04g01715 Car-Chr4:9825448 2.06E-59 wgd
Car18g01042 Car-Chr18:10741170 Car04g01715 Car-Chr4:9825448 0 wgd
Car04g01715 Car-Chr4:9825448 Car04g02676 Car-Chr4:20798017 0 wgd
Car04g01715 Car-Chr4:9825448 Car05g00786 Car-Chr5:6234426 1.19E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02480 . . . . . . . . . . . . . . . Car04g01715 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01715 Car_Chr04 FPKM 22.541899 23.216539 16.254601 14.332243 2.469776 1.579984 2.306998 18.944471 13.87704 16.376701