Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01718 ATGAACTCTAAACCTTCTGGAACTTCCGCCGGTTTGCCGGTGCCGGGGAGCTCCGGAGGCAAGGGAAACTCGTCGTCGTCGTCATCGTCATCGGCATCGGGTACGAGCAAGGAGAAGCAAAAGGAGAAAGCGAGAGTGAGTAGAACGTCACAGATACTATGGCACGCTCACCAAAATGATTCTGCTGCTGTTCGCAAGCTCCTGGAGGAGGATCACTCCCTTGTCCATGCCAGAGATTATGACAACCGCACTCCTCTCCATGTTGCATCGCTTCATGGCTGGATCGTCGTTGCCAAGTGTTTGATCGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACACCGCTAGCTGATGCAGAAGGAGCTAAAAAGTATGACATAATTGAGTTATTAAAATCGTATGGTGGCCTTTCCTATGGTCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCTTCCTCCTCTGCCAAATAAATGTGATTGGGAAGTTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTGGCTGTCAAGCGTATTCTTCCATCACTTTCAGATGATAGACTCGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACCGAGAAGAAACCACTTATGTTAATCACTGAATATTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCCCTCAGTCCTGCTACGGCCATAAATTTTGCACAGGACATCGCCAGGGGAATGACTTATCTCCACAACGAGCCAAATGTTATAATTCACCGTGACCTAAAACCTAGGAACGTTCTTTTAGTCAGCTCAGGTGTGGAGCATCTAAAAGTTGGCGACTTTGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACAGGCGAGACCGGGAGCTGTAAGTAG 1029 47.23 MNSKPSGTSAGLPVPGSSGGKGNSSSSSSSSASGTSKEKQKEKARVSRTSQILWHAHQNDSAAVRKLLEEDHSLVHARDYDNRTPLHVASLHGWIVVAKCLIEHGADVNAQDRWKNTPLADAEGAKKYDIIELLKSYGGLSYGQNGSHFEPKPVLPPLPNKCDWEVDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAQDIARGMTYLHNEPNVIIHRDLKPRNVLLVSSGVEHLKVGDFGLSKLIKVQNSHDVYKMTGETGSCK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9842902 9847586 - Carg14387-RA Car04g01718 147143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01718 342 ProSiteProfiles Protein kinase domain profile. 173 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01718 342 Pfam Protein tyrosine and serine/threonine kinase 177 329 IPR001245 GO:0004672|GO:0006468
Car04g01718 342 MobiDBLite consensus disorder prediction 1 35 - -
Car04g01718 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Car04g01718 342 ProSiteProfiles Ankyrin repeat profile. 81 113 IPR002110 GO:0005515
Car04g01718 342 Pfam Ankyrin repeats (3 copies) 52 112 IPR002110 GO:0005515
Car04g01718 342 ProSiteProfiles Ankyrin repeat region circular profile. 81 113 - -
Car04g01718 342 ProSitePatterns Protein kinases ATP-binding region signature. 179 200 IPR017441 GO:0005524
Car04g01718 342 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01718 Car-Chr4:9842902 Car18g00413 Car-Chr18:2588834 2.34E-69 dispersed
Car04g01718 Car-Chr4:9842902 Car18g01039 Car-Chr18:10720494 9.46E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88820 PF07714 PK_Tyr_Ser-Thr 5.30E-39 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01718 - - csv:101215575 607.06