Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01727 ATGGCGTCCAAAGCTTTCCTCTTCGCTCTTTGCTTCATTTCATTCTCCTCTTCTATCTTAGCCGAATTTGTTAAAGTTTCTGTGAAAGGAGTGACCACCATTGCTGAAACCGACAATGATTTCATCTGTGCTACTCTGGATTGGTGGCCTTCTGATAAATGTGATTACGGCCAATGCCCCTGGGGAAAAGCTGGCCTTCTCAATTTGGATCTGCAGAACATTATCTTGGCTCGGATTACGTTTGGTTTGAACGCTCTAATCGGTAAAAAACCATCCAATGATGGAAAAGGCACATGGGTTGGTGATTGGGATCCACGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGCTACCAAATCGATTCTTATGAACTGGGAAATGAGCTTTCTGGTAGTGGGGTTTCTGCAAGGCTTGAGGCTGATCAATACGCCAAGGATCTTACTCTCATGAGACAGGTAGTGGAAGAAGTTTATCCTGATGCCAACAACAGACCCAAAATTCTGGGCCCTGCTGGGTTCTTTGACAGAGAATGGTTCAAGACCTTCCTTCAAAACACTGAACCCAACGCTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTCCAGGGGTTGATCCTGAGCTTATCTATAAGGTTCGAGACCCTTATGTTTTGGATCAAATTGCTCAAACTTTCAAGGAAGCTGCGGACGTTTCAGCCAGCTTTGGGCCGTGGTCTAAGCCTTGGATTGGTGAATCTGGTGGCGCTTACAACAGTGGTGGCAGAACTGTTTCTCATACCTTTGCTGATGGCTTCTGCGCACTTCTATGGCACAGACTAATGGGAACGAAGGTCCTGTCGGCGTCCCACGACAGCTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAGAACAACGACGGCGTGACAGTGCTTCTAATCAACATGTCGAACTCGACGAGCTATGATGTGAAGATTGTGAGCGAAAGAAGGCTTTATCCCAACGCCATGGGCGGGCGATTACAGGCAAGAGAAGAGTACCACTTGAGTCCCAAAGACGGCGATATTCAAAGCGACGTGATGCTCCTCAACGGATCTCCTCTGCAGCTGACACCCAAGTTGGACATTCCCGGCATGTCGCCCAAGCTGGTGGATCCCACTTCTGCCGTGTCAGTCGCCCCTAATTCCTACGACTGGTTGGGAAGGCAATTCTCGCGGCAAATGAGTCGAGGGAATGAATTCCCCGACGACGGAATAGAGGGTGTAACCGCCGTAGCAGCCGCCGCCTATGCCATTCTTTCTGTTGAAGAATCGGGACCCATAAAGAATGTCGATCATCCTGAAACGTCGTTGTTCCAGAAGACAAAGAACGTCAAGGAGGACAATCGTACACCCACTCCACGTCCGGCGCCGGAACCTGATAAGATTCCCCAGCCGTTCTCAGTGACAGTAAACTCCGAACAAGAAAAACAGAGACCAATAGAATACACAACCAACCCTTCTCCGGCCGCCATCAACAACATCTCCGGCGGCGGAAGAACAGAACCAGAGAGAGCAGTAGCAGTCCCTGGAAAGCCACAAACCCTGCCTTCTGAAACGAAAGCAGATCTGTGGGAAAAGGCAGAGCTGGGTAAAATCCAAGAAAGATACCAGAAGGTGGATGAAAGAATTTGTTACTGGGAAAGCAAGAAGAAGGACAAAGCCATGCGCAAATTTGAAGCATCGCAGGCTGAGGGAATGAAGAAGAGTAAGAGGATAAAGGGAAGAAGAAAGCTGGAGGAAGACATGGAGTTCATAAAGAAAATAGGAGGAGAAGCAAGAACCAAAGCAGAGCAGAAGAAGAAGAAGGAGATTCTGAAGGCTAAGCAGAGAGCAGATATTATCAGACAGACAGGGAAGCTTCCCCTTGCTTGCTGCTGCTGA 1911 48.3 MASKAFLFALCFISFSSSILAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYGQCPWGKAGLLNLDLQNIILARITFGLNALIGKKPSNDGKGTWVGDWDPRNARDFIRYTASKGYQIDSYELGNELSGSGVSARLEADQYAKDLTLMRQVVEEVYPDANNRPKILGPAGFFDREWFKTFLQNTEPNAVDGVTHHIYNLGPGVDPELIYKVRDPYVLDQIAQTFKEAADVSASFGPWSKPWIGESGGAYNSGGRTVSHTFADGFCALLWHRLMGTKVLSASHDSSPYLRVYSHCTKNNDGVTVLLINMSNSTSYDVKIVSERRLYPNAMGGRLQAREEYHLSPKDGDIQSDVMLLNGSPLQLTPKLDIPGMSPKLVDPTSAVSVAPNSYDWLGRQFSRQMSRGNEFPDDGIEGVTAVAAAAYAILSVEESGPIKNVDHPETSLFQKTKNVKEDNRTPTPRPAPEPDKIPQPFSVTVNSEQEKQRPIEYTTNPSPAAINNISGGGRTEPERAVAVPGKPQTLPSETKADLWEKAELGKIQERYQKVDERICYWESKKKDKAMRKFEASQAEGMKKSKRIKGRRKLEEDMEFIKKIGGEARTKAEQKKKKEILKAKQRADIIRQTGKLPLACCC 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9902349 9907292 - Carg14378-RA Car04g01727 147152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01727 636 MobiDBLite consensus disorder prediction 448 464 - -
Car04g01727 636 MobiDBLite consensus disorder prediction 505 527 - -
Car04g01727 636 Pfam Remorin, C-terminal region 528 631 IPR005516 -
Car04g01727 636 Pfam Glycosyl hydrolase family 79, N-terminal domain 77 269 IPR005199 GO:0016020|GO:0016798
Car04g01727 636 MobiDBLite consensus disorder prediction 436 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01727 Car-Chr4:9902349 Car07g00076 Car-Chr7:487685 3.86E-09 dispersed
Car01g00754 Car-Chr1:4567628 Car04g01727 Car-Chr4:9902349 5.04E-17 transposed
Car05g01182 Car-Chr5:11216344 Car04g01727 Car-Chr4:9902349 4.77E-15 transposed
Car12g01156 Car-Chr12:11140566 Car04g01727 Car-Chr4:9902349 3.30E-16 transposed
Car01g00752 Car-Chr1:4560326 Car04g01727 Car-Chr4:9902349 1.53E-12 wgd
Car13g00925 Car-Chr13:9514667 Car04g01727 Car-Chr4:9902349 1.13E-11 wgd
Car18g01030 Car-Chr18:10653187 Car04g01727 Car-Chr4:9902349 3.37E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01727 K07964 - csv:101214214 523.472