Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01727 ATGGCGTCCAAAGCTTTCCTCTTCGCTCTTTGCTTCATTTCATTCTCCTCTTCTATCTTAGCCGAATTTGTTAAAGTTTCTGTGAAAGGAGTGACCACCATTGCTGAAACCGACAATGATTTCATCTGTGCTACTCTGGATTGGTGGCCTTCTGATAAATGTGATTACGGCCAATGCCCCTGGGGAAAAGCTGGCCTTCTCAATTTGGATCTGCAGAACATTATCTTGGCTCGGATTACGTTTGGTTTGAACGCTCTAATCGGTAAAAAACCATCCAATGATGGAAAAGGCACATGGGTTGGTGATTGGGATCCACGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGCTACCAAATCGATTCTTATGAACTGGGAAATGAGCTTTCTGGTAGTGGGGTTTCTGCAAGGCTTGAGGCTGATCAATACGCCAAGGATCTTACTCTCATGAGACAGGTAGTGGAAGAAGTTTATCCTGATGCCAACAACAGACCCAAAATTCTGGGCCCTGCTGGGTTCTTTGACAGAGAATGGTTCAAGACCTTCCTTCAAAACACTGAACCCAACGCTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTCCAGGGGTTGATCCTGAGCTTATCTATAAGGTTCGAGACCCTTATGTTTTGGATCAAATTGCTCAAACTTTCAAGGAAGCTGCGGACGTTTCAGCCAGCTTTGGGCCGTGGTCTAAGCCTTGGATTGGTGAATCTGGTGGCGCTTACAACAGTGGTGGCAGAACTGTTTCTCATACCTTTGCTGATGGCTTCTGCGCACTTCTATGGCACAGACTAATGGGAACGAAGGTCCTGTCGGCGTCCCACGACAGCTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAGAACAACGACGGCGTGACAGTGCTTCTAATCAACATGTCGAACTCGACGAGCTATGATGTGAAGATTGTGAGCGAAAGAAGGCTTTATCCCAACGCCATGGGCGGGCGATTACAGGCAAGAGAAGAGTACCACTTGAGTCCCAAAGACGGCGATATTCAAAGCGACGTGATGCTCCTCAACGGATCTCCTCTGCAGCTGACACCCAAGTTGGACATTCCCGGCATGTCGCCCAAGCTGGTGGATCCCACTTCTGCCGTGTCAGTCGCCCCTAATTCCTACGACTGGTTGGGAAGGCAATTCTCGCGGCAAATGAGTCGAGGGAATGAATTCCCCGACGACGGAATAGAGGGTGTAACCGCCGTAGCAGCCGCCGCCTATGCCATTCTTTCTGTTGAAGAATCGGGACCCATAAAGAATGTCGATCATCCTGAAACGTCGTTGTTCCAGAAGACAAAGAACGTCAAGGAGGACAATCGTACACCCACTCCACGTCCGGCGCCGGAACCTGATAAGATTCCCCAGCCGTTCTCAGTGACAGTAAACTCCGAACAAGAAAAACAGAGACCAATAGAATACACAACCAACCCTTCTCCGGCCGCCATCAACAACATCTCCGGCGGCGGAAGAACAGAACCAGAGAGAGCAGTAGCAGTCCCTGGAAAGCCACAAACCCTGCCTTCTGAAACGAAAGCAGATCTGTGGGAAAAGGCAGAGCTGGGTAAAATCCAAGAAAGATACCAGAAGGTGGATGAAAGAATTTGTTACTGGGAAAGCAAGAAGAAGGACAAAGCCATGCGCAAATTTGAAGCATCGCAGGCTGAGGGAATGAAGAAGAGTAAGAGGATAAAGGGAAGAAGAAAGCTGGAGGAAGACATGGAGTTCATAAAGAAAATAGGAGGAGAAGCAAGAACCAAAGCAGAGCAGAAGAAGAAGAAGGAGATTCTGAAGGCTAAGCAGAGAGCAGATATTATCAGACAGACAGGGAAGCTTCCCCTTGCTTGCTGCTGCTGA 1911 48.3 MASKAFLFALCFISFSSSILAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYGQCPWGKAGLLNLDLQNIILARITFGLNALIGKKPSNDGKGTWVGDWDPRNARDFIRYTASKGYQIDSYELGNELSGSGVSARLEADQYAKDLTLMRQVVEEVYPDANNRPKILGPAGFFDREWFKTFLQNTEPNAVDGVTHHIYNLGPGVDPELIYKVRDPYVLDQIAQTFKEAADVSASFGPWSKPWIGESGGAYNSGGRTVSHTFADGFCALLWHRLMGTKVLSASHDSSPYLRVYSHCTKNNDGVTVLLINMSNSTSYDVKIVSERRLYPNAMGGRLQAREEYHLSPKDGDIQSDVMLLNGSPLQLTPKLDIPGMSPKLVDPTSAVSVAPNSYDWLGRQFSRQMSRGNEFPDDGIEGVTAVAAAAYAILSVEESGPIKNVDHPETSLFQKTKNVKEDNRTPTPRPAPEPDKIPQPFSVTVNSEQEKQRPIEYTTNPSPAAINNISGGGRTEPERAVAVPGKPQTLPSETKADLWEKAELGKIQERYQKVDERICYWESKKKDKAMRKFEASQAEGMKKSKRIKGRRKLEEDMEFIKKIGGEARTKAEQKKKKEILKAKQRADIIRQTGKLPLACCC 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9902349 9907292 - Carg14378-RA Car04g01727 147152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01727 636 MobiDBLite consensus disorder prediction 448 464 - -
Car04g01727 636 MobiDBLite consensus disorder prediction 505 527 - -
Car04g01727 636 Pfam Remorin, C-terminal region 528 631 IPR005516 -
Car04g01727 636 Pfam Glycosyl hydrolase family 79, N-terminal domain 77 269 IPR005199 GO:0016020|GO:0016798
Car04g01727 636 MobiDBLite consensus disorder prediction 436 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01727 K07964 HPSE; heparanase [EC:3.2.1.166] - csv:101214214 523.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01727 Car-Chr4:9902349 Car07g00076 Car-Chr7:487685 3.86E-09 dispersed
Car01g00754 Car-Chr1:4567628 Car04g01727 Car-Chr4:9902349 5.04E-17 transposed
Car05g01182 Car-Chr5:11216344 Car04g01727 Car-Chr4:9902349 4.77E-15 transposed
Car12g01156 Car-Chr12:11140566 Car04g01727 Car-Chr4:9902349 3.30E-16 transposed
Car01g00752 Car-Chr1:4560326 Car04g01727 Car-Chr4:9902349 1.53E-12 wgd
Car13g00925 Car-Chr13:9514667 Car04g01727 Car-Chr4:9902349 1.13E-11 wgd
Car18g01030 Car-Chr18:10653187 Car04g01727 Car-Chr4:9902349 3.37E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g70 . . . . . Bpe10g00894 . Bma15g00136 Cmo04g01772 . . . . . Sed07g1998 . Cpe01g01496 Bhi07g01513 Tan04g1024 Cmetu10g0886 Lac13g0362 Hepe10g1783 . . Cla05g02405 Cam05g2582 Cec05g2614 Cco05g2654 Clacu05g2584 Cmu05g2438 Cre05g2555 . . . . Lsi04g00375 Csa05g02498 Chy10g01047 Cme10g00373 Blo06g00925 . . . . . . . . . . Cma04g01691 . Car04g01727 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005423 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 7 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01727 Car_Chr04 FPKM 24.081472 27.00355 26.235731 27.320961 36.524258 35.304214 35.056938 32.588753 30.358353 28.387554