Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g01730 | ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGATGAATTATCAGGCGGATCTGGCACTAATCCTTTTGATTCTGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCATTATACCAAACTCCATTTCCGCCAACGATTTTGATGATGATGATGATGATGGTTTTGTTGGAAAAAGAAGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCGGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAATTATGCTGTGTATAAAGCAGAGGAGACCACAAAATCTGTTCACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCTAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAACTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGGGACTAAAACACCGCCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTGATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAGGGCGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA | 915 | 44.04 | MFSFMKSPAKVTKQNSVDELSGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLIIPNSISANDFDDDDDDGFVGKRRTATSAASKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVHNCLKIAEDIREDATKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRTENNKEQREKLGVSTGKKQSGTKTPPSEPTGAIQKVEAQKEMQDDALSDLSDILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK | 304 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9914376 | 9916806 | - | Carg14375-RA | Car04g01730 | 147155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g01730 | 304 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
| Car04g01730 | 304 | MobiDBLite | consensus disorder prediction | 8 | 56 | - | - | |
| Car04g01730 | 304 | Gene3D | - | 236 | 303 | - | - | |
| Car04g01730 | 304 | MobiDBLite | consensus disorder prediction | 216 | 231 | - | - | |
| Car04g01730 | 304 | Gene3D | - | 97 | 175 | - | - | |
| Car04g01730 | 304 | Coils | Coil | 270 | 297 | - | - | |
| Car04g01730 | 304 | SUPERFAMILY | SNARE fusion complex | 234 | 301 | - | - | |
| Car04g01730 | 304 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 108 | 172 | IPR044766 | GO:0005484|GO:0031201 | |
| Car04g01730 | 304 | SMART | tSNARE_6 | 234 | 301 | IPR000727 | - | |
| Car04g01730 | 304 | SMART | tSNARE_6 | 106 | 173 | IPR000727 | - | |
| Car04g01730 | 304 | MobiDBLite | consensus disorder prediction | 174 | 234 | - | - | |
| Car04g01730 | 304 | SUPERFAMILY | SNARE fusion complex | 101 | 172 | - | - | |
| Car04g01730 | 304 | MobiDBLite | consensus disorder prediction | 69 | 94 | - | - | |
| Car04g01730 | 304 | PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | 1 | 304 | - | - | |
| Car04g01730 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 239 | 301 | IPR000727 | - | |
| Car04g01730 | 304 | CDD | SNARE_Qc | 242 | 300 | - | - | |
| Car04g01730 | 304 | MobiDBLite | consensus disorder prediction | 201 | 215 | - | - | |
| Car04g01730 | 304 | Coils | Coil | 125 | 145 | - | - | |
| Car04g01730 | 304 | PANTHER | SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED | 1 | 304 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00756 | Car-Chr1:4573413 | Car04g01730 | Car-Chr4:9914376 | 9.29E-109 | wgd | |
| Car10g00205 | Car-Chr10:993235 | Car04g01730 | Car-Chr4:9914376 | 1.66E-36 | wgd | |
| Car11g00173 | Car-Chr11:971346 | Car04g01730 | Car-Chr4:9914376 | 7.64E-95 | wgd | |
| Car13g00924 | Car-Chr13:9512034 | Car04g01730 | Car-Chr4:9914376 | 2.03E-51 | wgd | |
| Car18g01029 | Car-Chr18:10644607 | Car04g01730 | Car-Chr4:9914376 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g01730 | K18211 | - | csv:101213250 | 538.11 |