Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01738 ATGAAAGACAACGAATCTTGGAAGTCGGTTCCTGCATTGTTGTGCCTGCCGGGAACGGATTTCCGGGATCTATTGGTGGAAGTGGGAGAAAGCTTGAAACTATTGAAGAAGGCGAGAACAATAGAATATATGGCAGCGACGGGTAGATGTGAAGATACCGCTGGGGAAGGATTAGGCAGTACACATTCTGAAGATACTGCTGGGGAAGGATTTTCACTTTCCCCAACAGAGCAGCTGGCGTATGGGTCTTCATCATGTATAAACTTGTTGGAATTATCAGATCTCGTTCAAGTTGGCGAAAATGTTAACCGACCCGAAGCAGGCACAATTTTCTTGGGAAATCCCGATCATGATGTTTACCAGCTTCAATTTAAAGATGATGAGAGCGATGTTTCCAGCATTTGTTCTGCCAAATCAGAGAAGAGTAGCGGTTCTCAAGGTCCCACATCTGCATCTCAAGTTTATGATATTACCCATGAGTCTGGTGGAAATGCTATGTCTCCAACCCAATCCCCTCCTCTTCAGACAATGGATCGTGTGGGAGGATATGAATCATATGATCCGTCAAGAATTCCGTCTGCAGTTTTCCAAAGAAGTAGATCAACCACTCCATTGGAATGGAGTATTGCTTCAAATGAGTCCTTGTTTAGCATTCATGGTGGAGATGATAGTTTCTCCGGAGATAATTTGTCGATGTTGAGTGATTTAGGGAAGTCAGACGAGTTGCTTGTGTTTAACTCACCACCTGAAGTTATCACGTCAAGAGAAACTGAAATGAAGAGTGTCGAATACGAAGAGGAGCCTAAAGTGGCAGATAGCACAGAATATAACATTGAGGATAAAGAGGGTTTGGTTGCAGAAGATCTAAGTGGAAGAAACGTACTGCCTCCTGCATTATCATCGAATTCCTCTAGCAGATCTCGCCACTCTGAAAGAAGTCAATGCAGCTCAAATTCCTTCGCTTTCCCCATTTTGGCCGATGAGGTGGCTCAGGATGGATCTGTGCTTGCGGATGATAAAATAGAAGGTGCTCCAGTCTCTACAAAATCTAATGCAAACTCTTGGTTTCCCTGCTGTTCATGTTCTTGTTACAAATGGAATTGCTATTCACGTTCTTGTTGCAAATGGACTTGCTGTTCATGTTCGTCTTGTTGCACATGGAACTGCTATAGTTGTAATTTTCGTCCTCACTGTCATTTTTGTCCTCGATGCCGTATTTTCTACCCTTGCCATTTTTGTCGTGGTTAA 1248 43.35 MKDNESWKSVPALLCLPGTDFRDLLVEVGESLKLLKKARTIEYMAATGRCEDTAGEGLGSTHSEDTAGEGFSLSPTEQLAYGSSSCINLLELSDLVQVGENVNRPEAGTIFLGNPDHDVYQLQFKDDESDVSSICSAKSEKSSGSQGPTSASQVYDITHESGGNAMSPTQSPPLQTMDRVGGYESYDPSRIPSAVFQRSRSTTPLEWSIASNESLFSIHGGDDSFSGDNLSMLSDLGKSDELLVFNSPPEVITSRETEMKSVEYEEEPKVADSTEYNIEDKEGLVAEDLSGRNVLPPALSSNSSSRSRHSERSQCSSNSFAFPILADEVAQDGSVLADDKIEGAPVSTKSNANSWFPCCSCSCYKWNCYSRSCCKWTCCSCSSCCTWNCYSCNFRPHCHFCPRCRIFYPCHFCRG 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9953307 9955999 + Carg14367-RA Car04g01738 147163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01738 415 MobiDBLite consensus disorder prediction 133 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01738 - - - cmos:111458373 714.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01738 Car18g01018 CCT
Car04g01738 Car18g01018 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01738 Car-Chr4:9953307 Car10g00280 Car-Chr10:1346380 5.27E-16 dispersed
Car09g01140 Car-Chr9:11905142 Car04g01738 Car-Chr4:9953307 7.33E-33 transposed
Car11g00188 Car-Chr11:1078006 Car04g01738 Car-Chr4:9953307 2.80E-11 wgd
Car15g00233 Car-Chr15:1314906 Car04g01738 Car-Chr4:9953307 3.44E-12 wgd
Car18g01018 Car-Chr18:10595275 Car04g01738 Car-Chr4:9953307 1.17E-106 wgd
Car04g01738 Car-Chr4:9953307 Car04g02698 Car-Chr4:20912107 7.78E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g35 . . . . . Bpe10g00899 . Bma15g00132 Cmo04g01788 Cmo18g01125 . Cma18g01104 . Car18g01018 . Cpe09g00222 Cpe01g01506 Bhi07g01487 . . . . . . Cla05g02391 Cam05g2568 Cec05g2601 . . . Cre05g2539 . . . . . Csa05g02515 Chy10g01059 Cme10g00356 Blo06g00927 . . . . . . . . . . Cma04g01703 . Car04g01738 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009041 1 3 1 1 1 1 2 0 1 1 1 0 2 1 1 2 0 0 2 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01738 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0