Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01751 ATGTCTGCGGAACATTTCGTTGGGTCGGCGGCCGATGCGGCGGCGGCGAAGAAACCTGAGATTGAGAATGGAGTATCCGCCTCACAGCCCGATTCTATTTCCTCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCCCATTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTACCAGAACGTTTTGGTATTTCAGTCATCAACTTATGGGAAGGTTCTGGTTTTGGATGGGGTGATTCAGCTTACAGAGAGAGATGAATGTGCTTACCAAGAGATGATCACCCACCTTCCACTTTGCTCAATTCCAAACCCCAAAAAGGTTCTCGTTATCGGTGGAGGAGATGGCGGTGTTTTGCGAGAGGTGGCTCGTCATTCATCTGTTGAGCGGATAGATATCTGTGAAATCGACAAGATGGTAGTTGAGGTTTCCAAAGAATTTTTCCCTCGCGTAGCTGTCGGGTTTGAGGATCCTCGTGTCACTCTTCACATTGGTGATGGCGTCGCATTTCTGAAGGCTGTTCCTGAGGGCACTTATGACGCAGTTATAGTGGATTCTTCTGATCCTATTGGTCCTGCACAAGAGCTCTTTGAGAAGCCATTCTTTGCATCAGTTGCCAAAGCTCTTCGACCAGGAGGTGTTGTGTGTACTCAAGCAGAGAGCATTTGGCTTCACATGCATATCATTGAAGACATTGTGACAAATTGCCGCCAAATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCTACATATCCAAGCGGAGTGATTGGGTTTATGCTCTGCTCAACTGAGGGGCCTCCTCTTGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAACGGTATCGACAACGTGAAGAGTCCGCTCAAGTTTTACAACTCGGAGATTCATACAGCAGCTTTCTGTTTGCCTTCTTTTGCGAAGAAGATCATCGATTCAAAAGCAAAATGA 987 46.71 MSAEHFVGSAADAAAAKKPEIENGVSASQPDSISSVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVERIDICEIDKMVVEVSKEFFPRVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPLDFKHPVNPVEVNGIDNVKSPLKFYNSEIHTAAFCLPSFAKKIIDSKAK 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10047849 10050703 - Carg14354-RA Car04g01751 147176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01751 328 Pfam Spermine/spermidine synthase domain 96 278 - -
Car04g01751 328 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 117 130 IPR030373 -
Car04g01751 328 Hamap Polyamine aminopropyltransferase [speE]. 39 324 IPR001045 GO:0003824
Car04g01751 328 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 38 275 IPR030374 -
Car04g01751 328 Pfam Spermidine synthase tetramerisation domain 39 93 IPR035246 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01751 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 581.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01751 Car18g00739 CCT
Car04g01751 Car18g00739 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00920 Car-Chr2:6517585 Car04g01751 Car-Chr4:10047849 6.77E-161 dispersed
Car04g01751 Car-Chr4:10047849 Car18g01222 Car-Chr18:11756476 1.08E-146 dispersed
Car05g00351 Car-Chr5:2024237 Car04g01751 Car-Chr4:10047849 2.36E-22 transposed
Car05g01324 Car-Chr5:12057610 Car04g01751 Car-Chr4:10047849 2.10E-32 transposed
Car06g01221 Car-Chr6:8854498 Car04g01751 Car-Chr4:10047849 9.49E-15 transposed
Car12g00002 Car-Chr12:17245 Car04g01751 Car-Chr4:10047849 4.01E-153 wgd
Car18g00739 Car-Chr18:8478833 Car04g01751 Car-Chr4:10047849 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01751 Car_Chr04 FPKM 24.629755 26.713839 20.057766 20.026901 20.038052 20.373827 19.978504 22.565969 19.956778 19.600134