Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01754 ATGGAATTGCCCCTCTTAAGCTTCTTCCTTCTGTGCATGTTTTTTGCAGCCCCTTCTTGTGGTACATACTACACACCTCCAAGCGTCCCACGTTTAACAGATCTCGTACCCAATGTCTCAATCGATCAATACTTCGCCAAGATTTTTGGGGCGGCAAATATCCAGCTGATGAGCAATGGGTCCTCTCTCAATCTCACTCTGAACAAACATTCTGGTAAATCATCATTGGATCTTAGCTTCTCCTTTCAGCCCGACTCTGTTTTGATTCATAACTTCTTCTCTTTTCATTTCTGGAGGTGCTGGTTTGGTCTCGAGGAGCAAATATCATTATGGGTTCTTCATTTGGTCCACAACCAACGAGATGATGAGGGCCATGTTCAGCTGTCGAATGCAGATGTTTATACCCATTCTCATGACGAGATTGACATAGAGCTGCTGGGACATGACAAGAGAAAAGATTGGGTTATTCAAACAAATATGTATGCAAATGGAAGCGTCAAGACAGGGAGAGAAGAGAAATTCTACCTCTGGTTTGATCCCAGCGTGAAGTACCACGATTACACCATCATTTGGAACAAATATCATACAGTGTTTTTGGTGGATAATGTTCCAATCAGAGAGCTGAGAAATTCTGAAGCTTTCTATCCATCAAAACCCATGTCAGTTTTCGTCACGATATGGGATGGTTCAGAATGGGCAACTCATGGAGGAAAGCACCCAGTAGACTATAGGTATGCACCATATGTGGCTTCTTTTGAAGAAATGGAGATCAATGGAAGTGTATCACCACCAATAGCCACTGTTCCTTCAAGCTCCAAAACCAATGTCTCGAGCCCGGATACCGTGGAGGGTCCAGAATTTATAAAGCTATCACAGCAGCAAATAGATGCCATGGATTGGGCAAGGAGGAAGCTCATGTTCTACTCCTATTGTAAAGATACATCCAGATACAAAGTTTTGCCACCAGAGTGCAAATAG 978 43.15 MELPLLSFFLLCMFFAAPSCGTYYTPPSVPRLTDLVPNVSIDQYFAKIFGAANIQLMSNGSSLNLTLNKHSGKSSLDLSFSFQPDSVLIHNFFSFHFWRCWFGLEEQISLWVLHLVHNQRDDEGHVQLSNADVYTHSHDEIDIELLGHDKRKDWVIQTNMYANGSVKTGREEKFYLWFDPSVKYHDYTIIWNKYHTVFLVDNVPIRELRNSEAFYPSKPMSVFVTIWDGSEWATHGGKHPVDYRYAPYVASFEEMEINGSVSPPIATVPSSSKTNVSSPDTVEGPEFIKLSQQQIDAMDWARRKLMFYSYCKDTSRYKVLPPECK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10057004 10058166 - Carg14351-RA Car04g01754 147179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01754 325 Pfam Glycosyl hydrolases family 16 132 244 IPR000757 GO:0004553|GO:0005975
Car04g01754 325 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 289 324 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car04g01754 325 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 252 IPR000757 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01754 K08235 E2.4.1.207; xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] - csv:101213644 486.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01754 Car18g00737 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01754 Car-Chr4:10057004 Car15g00831 Car-Chr15:4748960 3.73E-62 dispersed
Car18g00737 Car-Chr18:8468244 Car04g01754 Car-Chr4:10057004 1.06E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g735 . . . . . . Bma14g01787 . . Cmo18g00809 . Cma18g00805 . Car18g00737 . Cpe09g00499 Cpe01g01523 . . . . . . . Cla05g02531 Cam05g2721 Cec05g2752 Cco05g2793 Clacu05g2723 Cmu05g2577 Cre05g2691 Cone13ag1033 Cone19ag1024 . . Lsi04g00537 Csa05g02345 Chy10g00912 Cme10g00514 . Blo11g00909 Bda07g01596 . . . . . . . . Cma04g01722 . Car04g01754 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007012 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01754 Car_Chr04 FPKM 11.636146 13.644768 25.636435 23.193277 22.110531 21.297976 22.574966 37.079044 35.09388 37.518604