Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01761 ATGAGGTTTATGGATCTTCTCCAGTCGTACACAGATCAAAATGATGAAGACGGAAGCCCCGAGCAGGTTGCGTCTTCACCAGAAGCTTCTCCGCCTAGGCTCCTCCCCGCCAAAACCTCGGCGCCCAAGGTTGATGATACACTGTTAGCCCTCACGGTGGCCAACGCCAACCAGACCCTCTCAAAGCCGATAGACCCAACTCAACATCTCGTTGCCTTCAACCCCACTTACGACCAACTCTGGGCGCCCATTTACGGCCCATCACATCCCTATGCCAAGGATGGCATTGCACAGGGCATGCGAAACCACAAGCTAGGCTTCGTGGAGGATGCGTCCATTGAGCCATTTGTCTTCGATGAGCAGTACAACACTTTCCATAAGTATGGATATGCTGCTGACCCATCAGCTTCTGCTGGAAACAATTACATTGGGGACATGGAAGCTTTGCAGAAGAATGATGCCATCTCTGTGTATAACATTCCACAGCATGAGCAAAAGAAGCGGAAGATTGAGAAAAAGAAAGAAATGAGTGAAAATGAGGATGTGGAAGAGGACTTGAATCTGGCTGAAGTAGATAATCCAGCGAGTGATGTGTGGTTGATGAAGAACAGGAAGAGTCCATGGTCTGGGAAGAAGGAAGGTCTGGAAACCGAGCTGACTGAGGAGCAGAAGAAATATGCAGAAGAGTACGCAAAGAAGAAAGGTGAAGAGAAAGGTTCTGAGAAGGGAGAAGTTACCGCGGACAAGAGTACTTTTCATGGTAAAGAGGAAAGGGACTATCAGGGTAGATCTTGGATTGCACCCCCGAAGGATGCCAAGGCCACAAATGATCATTGCTATATACCGAAAAGATTGGTGCATACATGGAGCGGGCACACAAAGGGTGTATCTGCTATTAGATTCTTCCCTAAACATGGCCATTTGATTCTTTCAGCTGGTATGGATACCAAGGTAAAGATATGGGATGTGTTCAATTCTGGTAAATGTATGAGAACCTACATGGGTCACTCTCAAGCAGTTCGAGATATTTCATTTTGTAATGATGGGTCTAAGTTTTTGACTGCTGGATATGATAAAAAGATTAAGTATTGGGATACAGAAACAGGGCAAGTGATATCAACCTTCTCCACCGGGAAAATTCCTTATGTAGTTAAGCTTAATCCTGATGATGATAAGCAGAATATTTTGCTGGCAGGGATGAGTGATAAGAAAATCGTTCAGTGGGATATGAACACGGGACAGATTACGCAAGAGTACGATCAACATTTAGGAGCGGTGAATACCATTACATTTGTAGACAATAATAGGAGGTTTGTCACATCAAGCGATGACAAGTCGCTCCGTGTTTGGGAATTTGGAATTCCTGTTGTTATTAAGTATATTAGTGAGCCTCATATGCACTCCATGCCCTCCATTTCTGTACACCCCAATACGAATTGGCTCGCAGCACAGAGTTTAGACAATCAAATTCTTATTTATAGCACCAGGGAGAGATTTCAGCTGAACAAGAAAAAGAGATTTGCTGGGCACATTGTGGCAGGATATGCTTGTCAGGTTAATTTTTCACCAGATGGACGTTTTGTTATGTCGGGTGATGGTGAGGGAAAATGCTGGTTTTGGGACTGGAAATCCTGCAAGGTATTCAGAACTCTCAAGTGTCACGAAGGTGTATGCATTGGGTGTGAGTGGCATCCATTGGAGCAAAGTAAAGTAGCAACGTGCGGCTGGGATGGACTGATAAAGTATTGGTTAGTAAATCTCTTTACCTTGGTGTTTTACTTTTTGAAAGTTCTCAACTTTTAA 1803 44.37 MRFMDLLQSYTDQNDEDGSPEQVASSPEASPPRLLPAKTSAPKVDDTLLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSENEDVEEDLNLAEVDNPASDVWLMKNRKSPWSGKKEGLETELTEEQKKYAEEYAKKKGEEKGSEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWLVNLFTLVFYFLKVLNF 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10095113 10097308 - Carg14344-RA Car04g01761 147186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01761 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Car04g01761 600 MobiDBLite consensus disorder prediction 164 180 - -
Car04g01761 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 451 - -
Car04g01761 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 323 IPR001680 GO:0005515
Car04g01761 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 451 IPR001680 GO:0005515
Car04g01761 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 323 - -
Car04g01761 600 Coils Coil 212 232 - -
Car04g01761 600 MobiDBLite consensus disorder prediction 7 26 - -
Car04g01761 600 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Car04g01761 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 370 - -
Car04g01761 600 Coils Coil 160 192 - -
Car04g01761 600 MobiDBLite consensus disorder prediction 164 184 - -
Car04g01761 600 Pfam WD domain, G-beta repeat 284 322 IPR001680 GO:0005515
Car04g01761 600 Pfam WD domain, G-beta repeat 327 365 IPR001680 GO:0005515
Car04g01761 600 Pfam WD domain, G-beta repeat 506 541 IPR001680 GO:0005515
Car04g01761 600 Pfam WD domain, G-beta repeat 413 450 IPR001680 GO:0005515
Car04g01761 600 MobiDBLite consensus disorder prediction 1 39 - -
Car04g01761 600 MobiDBLite consensus disorder prediction 232 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01761 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1153.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01761 Car18g00732 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01761 Car-Chr4:10095113 Car03g00788 Car-Chr3:6546732 6.28E-29 dispersed
Car04g00870 Car-Chr4:5005390 Car04g01761 Car-Chr4:10095113 3.16E-43 transposed
Car08g01123 Car-Chr8:7603435 Car04g01761 Car-Chr4:10095113 2.66E-06 transposed
Car18g00732 Car-Chr18:8442110 Car04g01761 Car-Chr4:10095113 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01761 Car_Chr04 FPKM 12.848234 14.561077 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0