Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01766 ATGCCGCCTTCTTCAAACAATACTTCAAACAATACTTCGAACGATACTTCGAACGATACTTCAAACGATACCTCAAAGGATACTTCAAACGATACTTCAAACGATACTTCAAAGGATACTTCAAAGGATACTTCAAACGATACTTCAAAGGATACTTCAAACGATACTTCCAACGATACTTCCAACGATACTTCAAACGATACTTCAAACGATACTTCTTCTCCTACATCGGATTTTGTTTCAAATTCAAGTTTGCCGCCTGAAGCTCCGGATTCTTCTTCTTATTCTCCGCCGCCGCAATCAAATGACTTTACAACGTTCCCACTTAATAAAGCCGATGCTCCTGACCCGTCGTTTGTGTCATCGTCAATTGAAGCTCCACCTGCCGACCACGAAGGTTCACCATCTTCCTCACCGTCAGCTTCTCCGGAACCTGAAAGGACATCGCTCGCCCCTACTATCGCCTCCAATTTAATTGCATTCGACGAGAGTCCGCCATCGCCTAAAGTTTCTGCTTCACCACCGCCGTCTCCCCAGCCTCCTCCACCGCCGCCTCATCCACCACCACCACCTTCACCATTGCCTTCACCACCGCCTCCACAACTGCCTCCAGAACAGTCGGATGACGTTATCGTCGTCGATCCTCCACCTGCCCCTGTTCCGACCAAGAAAAAATCTTCGGAACATCGAGGAAGTCCACCTTCTCCAATATCTGAGAATGATTCCCCTGATGTGGCGAATGAAAGCACCGATCGGGGTTCTAAAAAAGCCAAGGAGCCTCCGCCATCTGAATCGACGGATCCTCTTCCTTCACCAGAAAGTCCGGACGTGATTCCTTCACCAGGTGCAAACTCGGCGAAGGGGGAACGAACTCGGAGTCCACCTCCAGAAACAATTTCTCCCGCACCAGAGGATAACATTCCTTCACCTCCCATAGTCACATCCGCTCGCGCTCCAAACAACTCACCTCCTTTTATCGACTCAACGCCCGTGAAATCAACATTGGGGCAGTCCAATGCACCATCGTCTGTTTCAAGTAGTCACACTGATATTGCAGTAGGCGCTGCAGTCATTGGAGTTTTCGTAATCGCTTTGGTTGCTGTGATTTTTGTGTTACTAAGGAAGAAGAAAAGACAGGGAAACATGTATGGGGGCCCCTACACGCCTCCTAATAACTACGGTGCTAAATCAGATGGAAATTACTATCCACATCAACATATGGGCAATTCTGGCTCTGCTGAAGGCTTCTACACTCAGGTCCCACATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATCCAGTGGCAGTGGAGCAGACTCAGGTGTGATAAACAGTGCTAAGTTCGTCTTTAGCTATGAGGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTCTACCAGGGTTGGCTTCCGGCAGGGAGGTCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGTCTCTGAGCATCATAGATTGCTCATCTATGATTTTGTTCCCAATAAGACTCTTGAGCATCATCTCCATGGCGATTTTGGACTTGCAAAATTGACAAACGATACAAACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGGTGGGCTCGTCCACTCCTCCTTCACACCCTTGAAACTGGGGTTTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGATCACTAGATATTGAAACAGACATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAGAGCACCATCTATGATTCTGGACAATACAGTCAAGACATCTCTAAATTCAGGAGAATGGCGCTTGGTGGAGACAGCTCCGAATTCGACATTTACAGTAGCGAATACAGTTCCAGAGAAATGAATGCAAGTGGGGAATCATGGAGATTCGAAAACAACTCAAGCGGTGAATCAGAAACTCGAGCTTTTCACGGACGAACTGGCGCACCACAAAGTCACCCTAGCGGTCGACAATTCTAA 2199 47.89 MPPSSNNTSNNTSNDTSNDTSNDTSKDTSNDTSNDTSKDTSKDTSNDTSKDTSNDTSNDTSNDTSNDTSNDTSSPTSDFVSNSSLPPEAPDSSSYSPPPQSNDFTTFPLNKADAPDPSFVSSSIEAPPADHEGSPSSSPSASPEPERTSLAPTIASNLIAFDESPPSPKVSASPPPSPQPPPPPPHPPPPPSPLPSPPPPQLPPEQSDDVIVVDPPPAPVPTKKKSSEHRGSPPSPISENDSPDVANESTDRGSKKAKEPPPSESTDPLPSPESPDVIPSPGANSAKGERTRSPPPETISPAPEDNIPSPPIVTSARAPNNSPPFIDSTPVKSTLGQSNAPSSVSSSHTDIAVGAAVIGVFVIALVAVIFVLLRKKKRQGNMYGGPYTPPNNYGAKSDGNYYPHQHMGNSGSAEGFYTQVPHTPVGNSFGSQKGTGSSGSGADSGVINSAKFVFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPAGRSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYDFVPNKTLEHHLHGDFGLAKLTNDTNTHVSTRVMGTFGWARPLLLHTLETGVFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRSLDIETDMSDLSNGVKYGQSTIYDSGQYSQDISKFRRMALGGDSSEFDIYSSEYSSREMNASGESWRFENNSSGESETRAFHGRTGAPQSHPSGRQF 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10109406 10112635 + Carg14339-RA Car04g01766 147191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01766 732 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524
Car04g01766 732 MobiDBLite consensus disorder prediction 313 346 - -
Car04g01766 732 Pfam Protein tyrosine and serine/threonine kinase 469 554 IPR001245 GO:0004672|GO:0006468
Car04g01766 732 MobiDBLite consensus disorder prediction 133 155 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 693 732 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 263 277 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 50 108 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 245 262 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 693 714 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 1 31 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 168 205 - -
Car04g01766 732 ProSiteProfiles Protein kinase domain profile. 466 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01766 732 MobiDBLite consensus disorder prediction 1 346 - -
Car04g01766 732 MobiDBLite consensus disorder prediction 32 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01766 - - - cpep:111803284 807.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01766 Car18g00729 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01766 Car-Chr4:10109406 Car15g00207 Car-Chr15:1142382 2.73E-91 dispersed
Car18g00985 Car-Chr18:10354626 Car04g01766 Car-Chr4:10109406 1.00E-82 wgd
Car18g00729 Car-Chr18:8428061 Car04g01766 Car-Chr4:10109406 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g700 . . . . . Bpe10g00839 Bma14g01795 Bma15g00184 . Cmo18g00802 . Cma18g00798 . Car18g00729 . Cpe09g00505 . Bhi07g01730 . . . . . . Cla05g02542 . . . . . . Cone13ag1041 . Cone8ag0663 . Lsi04g00550 . Chy10g00904 . Blo06g00877 Blo11g00916 Bda07g01602 . . . . . . . . Cma04g01733 . Car04g01766 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000097 10 8 10 10 9 3 11 2 3 7 6 3 8 7 2 12 3 3 12 2 7 2 4 3 6 5 5 3 3 7 176
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88821 PF07714 PK_Tyr_Ser-Thr 3.00E-13 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01766 Car_Chr04 FPKM 1.057762 0.665669 7.285112 8.184341 21.465912 23.007336 21.823 4.377957 4.69374 3.700225