Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01774 ATGGGTTCTGAAGGTCCAGGTGGGGTTACCATTCATGTGACTGGATTTAAGAAGTTCCATGGGGTTGCTGAAAATCCTACCGAGGCTATCGTCGATAACTTGAAGGCATTCGTCGAAGAAACAGGATTGCCTGCTGGTGTCACTCTTGGAAGTTGTACAGTTCTTGATGCTGCTGGAGATGGTGCTCTTCCACTGCTTTACAAAGTTCTGGAATCTGGCATCTCAAATGTCACAGAAACTACCAAACTCATATGGCTTCACTTAGGAGTCAATAGTGGTTCGGCCAGGTTTGCTGTTGAATGGCAAGCTGTAAACGAAGCTACTTTTCGTTATCCAGACGAACTCGGATGGCAGCCTCAGAAACTTCCAATAGTCATGGAGGATGGGGAAATCTCAATGATTAGAAAGACATCCTGCTCGGCTCCGACGATCTTAGAGAGGTTGAAGGCGAAAAGCTACAACGTGATATTATCGGAGGATGCGGGTCGTTTTAAGCCATTGCGTCTACATGTTGAAAATTGTTTTGATTGCAGTGATTGCTCCATCAATTCTGTAAATGTTAATATCCAAGCTGTGGACGCTGTTTCTTGCAAGGAAGGGCTTTTCTCACAAGGGACAAAAGAAGTGTAG 630 44.92 MGSEGPGGVTIHVTGFKKFHGVAENPTEAIVDNLKAFVEETGLPAGVTLGSCTVLDAAGDGALPLLYKVLESGISNVTETTKLIWLHLGVNSGSARFAVEWQAVNEATFRYPDELGWQPQKLPIVMEDGEISMIRKTSCSAPTILERLKAKSYNVILSEDAGRFKPLRLHVENCFDCSDCSINSVNVNIQAVDAVSCKEGLFSQGTKEV 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10140294 10142568 - Carg14331-RA Car04g01774 147199

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01774 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] - csv:105435561 288.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g674 . . . Bda11g01272 Bpe13g01469 Bpe10g00842 . Bma15g00181 . Cmo18g00794 . Cma18g00792 . . . Cpe09g00510 Cpe01g01540 . . . . . . . Cla05g02551 Cam05g2739 . Cco05g2811 . Cmu05g2593 Cre05g2708 Cone13ag1049 Cone19ag1039 . . Lsi04g00559 Csa05g02327 . Cme10g00533 Blo06g00881 . . Bda11g01272 . . . Bma06g00616 . . . . . Car04g01774 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002246 3 3 2 4 3 1 1 1 1 1 2 1 2 2 2 3 1 5 3 1 2 2 2 2 2 1 2 4 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01774 Car_Chr04 FPKM 2.365682 2.540216 14.250419 17.723124 6.71351 5.805647 8.038519 9.479287 7.616766 8.817351