Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01775 ATGAACCATCTCTTTGAACTTCCTGAAAAGATTTGCTATGTGCAATGTGGAATCTGCACCACCATTTTGCTGGTCAGCGTGCCGTGCAGCAGCTTGTCGATGGAGGTGACCGTGACGTGCGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGCTGAGAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTATCTCGCAATCTGCCCAAAGAAGCTTGTAGAGAAATGAGTTCAGGGAAGTTGTTTGACAGTTTCATAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTCACACCCCCCTCTGTAAACAAACCTCCTGAGAAAAGACAGCGTGTCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAACCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAACTTCCCTCCAACAATCCAACAAAAAGAAGACCCACAGAACACTCAAATTCCAGAG 525 44.95 MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLHFLSSLSRNLPKEACREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQNTQIPE 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10145112 10146841 - Carg14330-RA Car04g01775 147200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01775 175 MobiDBLite consensus disorder prediction 155 175 - -
Car04g01775 175 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Car04g01775 175 MobiDBLite consensus disorder prediction 156 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01775 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101211641 303.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01775 Car05g00019 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01775 Car-Chr4:10145112 Car15g01044 Car-Chr15:8220769 2.73E-43 dispersed
Car04g01775 Car-Chr4:10145112 Car05g00019 Car-Chr5:110295 1.29E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g669 . . . . . . . . . . . . . . . . Cpe01g01541 Bhi07g01746 . . Lac13g0189 Hepe10g1628 . . Cla05g02553 Cam05g2741 Cec05g2773 Cco05g2813 Clacu05g2742 Cmu05g2594 Cre05g2709 . . . . Lsi04g00561 Csa05g02325 Chy10g00892 Cme10g00537 . Blo11g00921 . . . . . . . . . Cma04g01741 Cma05g00022 Car04g01775 Car05g00019 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g01013 . 45 214 C2C2-YABBY Transcription Factor Family AT1G69180 57.8 2.3e-46 182.6
Car02g01316 . 75 238 C2C2-YABBY Transcription Factor Family AT2G45190 59.6 1.1e-42 170.2
Car15g01044 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 1.5e-41 166.4
Car02g01086 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 8.8e-54 207.2
Car15g01044 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 7.0e-43 171.0
Car02g01316 . 31 223 C2C2-YABBY Transcription Factor Family AT1G08465 52.1 2.6e-42 169.1
Car02g01316 . 42 237 C2C2-YABBY Transcription Factor Family AT4G00180 56.2 7.9e-51 197.6
Car15g01044 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 55.1 1.5e-49 193.4
Car04g01775 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.4e-36 150.6
Car05g01205 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 231.9
Car12g01175 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.7e-56 216.1
Car10g00501 . 7 168 C2C2-YABBY Transcription Factor Family AT2G26580 67.3 7.1e-55 210.7
Car02g01086 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 8.4e-48 187.2
Car11g00415 . 7 152 C2C2-YABBY Transcription Factor Family AT2G26580 58.3 2.3e-45 179.1
Car15g01044 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 3.3e-44 175.3
Car02g01316 . 33 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.6 1.1e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3398 PF04690 YABBY 4.60E-57 CL0114 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01775 Car_Chr04 FPKM 23.03199 26.023434 11.629427 11.432846 7.958196 7.838708 8.733051 19.00219 17.441177 19.960665