Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01776 ATGGCAAGAATGCCGTCACTGCCAGGCCTCCACCTATTTTCCTCTCTCCCTTCAGCTCCGCCGCCGCACGATCCTTCCTCCGCTTCTACTCCTTCAACACCCATTCCAATTCCCAAATACCCTCCACCCAAATCCCGCATTCTTCGAACCAACCCTCCAAAACCACCTAATCCTGCTCTCAAAACCTTCCACCGCCGTTCCAAATACTACAAGCCTGTCAAGGACGGAGTAATTTCATCCCACGGCGATCGAGCCGTCGTCATCGGCGATTCGGGTGTCTCGTATCTACTTCCCGACGCTCCATTTGAGTTTCAGTATAGCTACTCTGAGATCCCCAAGGTCAAGCCCATTGCAATTCGTGAACCGGCGTTTCTGCCCTTTGCACCTCCGACGATGCCGAGGCCCTGGACGGGTAAAGCTCCGTTGAAGAGCTCGAAGAAGAAAATCCCTCTATTTGATTCCTTCAATCCGCCTCCTCCTGGTACGAAGGGAGTTAAGCAAGTCGAAATGCCTGGCCCGTTCCCGCTTGGCAAGTATCCGAAAGAGGGGAAAAGCAGAGAGGAGATACTTGGGGAGCCCCTCAAGAATTGGGAGATACGCATGCTGGTGAAACCCCATTTGTCACATAATCGCCAGGTTAATCTTGTTGGTGACCTTTTTTCATTTGAATTGGACGTGTTAGGAAGGGATGGACTTACCCACAATATGTTGGAATTGATCCATTCTCATTGGAAGCGGCAGCGTGTCTGTAAAGTTCGCTGCAAAGGTGTTCCCACAGTTGATATGGACAATATCTGCCATCATCTCGAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTCGGTGGCGTATTATATCTTTTCCGAGGTAGAAACTACAATTATCGCACTCGCCCTCAATACCCTGTAATGCTGTGGAAACCTGCGGCCCCTGTGTATCCGAAACTTATTCAAGAAGCTCCAGAAGGTTTAACTATAGAGGAAGCTAATGAGCTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCGTTGGTGAATGACGTAAGGCACGCTTTCGAAGGAAGCATTCTGGTGAAGGTTGATTGCACTGGGATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTCAAGGAATTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCAGATATTTCAGAAGATCCTTCTGCTACACTTCCTAGTCAAGCACGCACAAATGATGTCGAGTCTATTGAGAATGGTGACCTCTTACATGGCAATCATCATACGATCAAAACTAGCCCAAAAATGAAGCTGTTATGGGAGAAGGCTATTGATTCGAACAAGGCATTGTTGCTAAATGAGATAGGTCTTGCTCCGGATGACCTTTTAGAGAAAGTTGAGGAGTTCGAGAGAATTTCACAAGCAACCGAGCATTCATATCCAGCATTAATCATGTCAAGTGAAGATGACAGCAGCAGCCCAGATGACAACCTTGAAAGTCAGGATCACGACCAATCTAACTACAGCTCCGACGATGATGAAGATCAGGAAGGAGACCTTTTTGATAATGTTAACCCGTCTGTACCTATGGGATCATTACCTGTTGATATCATAGCAAAGAAGCTCAGGCCTGAATAG 1692 46.04 MARMPSLPGLHLFSSLPSAPPPHDPSSASTPSTPIPIPKYPPPKSRILRTNPPKPPNPALKTFHRRSKYYKPVKDGVISSHGDRAVVIGDSGVSYLLPDAPFEFQYSYSEIPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKQVEMPGPFPLGKYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLVGDLFSFELDVLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHLEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTIEEANELRMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSDISEDPSATLPSQARTNDVESIENGDLLHGNHHTIKTSPKMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSPDDNLESQDHDQSNYSSDDDEDQEGDLFDNVNPSVPMGSLPVDIIAKKLRPE 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10150077 10154015 + Carg14329-RA Car04g01776 147201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01776 563 MobiDBLite consensus disorder prediction 503 552 - -
Car04g01776 563 ProSiteProfiles CRM domain profile. 322 418 IPR001890 GO:0003723
Car04g01776 563 ProSiteProfiles CRM domain profile. 192 300 IPR001890 GO:0003723
Car04g01776 563 MobiDBLite consensus disorder prediction 1 63 - -
Car04g01776 563 MobiDBLite consensus disorder prediction 18 59 - -
Car04g01776 563 Pfam CRS1 / YhbY (CRM) domain 324 407 IPR001890 GO:0003723
Car04g01776 563 Pfam CRS1 / YhbY (CRM) domain 227 289 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01776 - - - cmo:103488994 947.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01776 Car-Chr4:10150077 Car05g01268 Car-Chr5:11783433 8.93E-149 dispersed
Car04g01776 Car-Chr4:10150077 Car10g00218 Car-Chr10:1048000 1.77E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01776 Car_Chr04 FPKM 3.155233 2.425723 9.510045 9.009402 14.5776 16.152039 15.386034 11.486552 12.024223 12.54523