Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01779 ATGGAAGAAATGTACGGGTTGCAGTCCACGGCGGAGTATTCGGATAAGGCGTTGATGTCGCCGGAGAATCTGATTTTTCCGCCGGATTATCAGAGCCTTTTAGTGAGTTCCGGAGCGTTTCGTGATCGGATTCCGGTGTTTGGATCCAACGATTTGCTTTCGGCGGCGGCGTCCGCGATTTCGGAAGCTGAAGCAGTATCGATCACGCCGGAAATTCAAGGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCAGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAACCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGCAGATCCTGAGCTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTATAAATCAGATCTCAAAAGGCCTTTCGACGAAGCAACTACATTCTTGAACAAGATCGAACTGCAACTTAGTAGCCTCTGCACTGGCGCCTTCTCCAGAAGCCATTCCGTCTTATTGCTGATTGGAAAATCCAAGTACTGCTCATGGGATATCGTCGAGAGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAATGAAGGAGCTGTCTCGTCGGATGAAGAGTTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTCGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTGGTAGATTATTCAGAGAGGACTGA 1116 47.04 MEEMYGLQSTAEYSDKALMSPENLIFPPDYQSLLVSSGAFRDRIPVFGSNDLLSAAASAISEAEAVSITPEIQGEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQETDLCNRHAVTTCLGADPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSSLCTGAFSRSHSVLLLIGKSKYCSWDIVERGRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSGRLFRED 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10166478 10172810 + Carg14326-RA Car04g01779 147204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01779 371 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Car04g01779 371 ProSitePatterns 'Homeobox' domain signature. 325 348 IPR017970 GO:0000981|GO:0006355
Car04g01779 371 MobiDBLite consensus disorder prediction 351 371 - -
Car04g01779 371 Pfam ELK domain 267 288 IPR005539 GO:0003677
Car04g01779 371 Pfam KNOX1 domain 82 122 IPR005540 GO:0003677|GO:0005634
Car04g01779 371 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Car04g01779 371 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Car04g01779 371 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01779 Car18g00717 CCT
Car04g01779 Car18g00717 ECH
Car04g01779 Car05g00025 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01779 Car-Chr4:10166478 Car11g00082 Car-Chr11:440410 2.08E-93 dispersed
Car06g00770 Car-Chr6:5903329 Car04g01779 Car-Chr4:10166478 4.18E-10 dispersed
Car12g00568 Car-Chr12:3802660 Car04g01779 Car-Chr4:10166478 5.89E-67 dispersed
Car18g00717 Car-Chr18:8364211 Car04g01779 Car-Chr4:10166478 1.11E-118 transposed
Car12g00020 Car-Chr12:114752 Car04g01779 Car-Chr4:10166478 1.71E-06 wgd
Car18g00716 Car-Chr18:8359753 Car04g01779 Car-Chr4:10166478 2.80E-79 wgd
Car04g01779 Car-Chr4:10166478 Car05g00025 Car-Chr5:135513 2.41E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3399 PF03791 KNOX2 4.00E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01779 - - csv:101211876 565.074