Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01799 ATGGGAATCCTTTATCGCAGTTCTGTGAATAGAAAGCCAAACGACAGCATGAGGCTTATTATAGTAACTTTTGTGGGAGTGTTTTTGGGCTTTTTTATAGGAATATCTTTCCCAACATTATCACTAACAAAGCTAGGTGTCCCCTCTGGACTTATCCCGAAAATTGACCGTATGTACAATGCTGACCTAAAATCAGCCTCTTCTATCCAAGCACCTAAAAGATTTCCATCGAGGGGTGGTAGAGACTTAAAAAATTCTCAAAATCTGAATGGTACCTCAGAGATTTGGGTTCCATCAAATCCTAGAGGAGCCGAAAGACTAGCCCCAGGAATTGTTGCAGCCGAGTCAGACTTCTATCTACGTAGATTGTGGGGTAATCCCAGTGAGGACTTAACTAGTAAACCAAATTACCTTGTGACCTTCACTGTCGGTTATAACCAGAGAGACAACATTGATAAAGCAGTAAAAAAGTTTTCAGAGAACTTCACAATTCTTCTGTTTCACTACGATGGCCGAACAACTGAATGGGATGACTTCGAATGGTCGAAACGAGCAATTCACGTGAGTGCTCGAAAGCAGAGTAAATGGTGGTATGCCAAACGATTCTTGCACCCTGACATCGTTGCACCTTATGACTACATCTTTATGTGGGATGAAGACCTGGGAGTTGAGAACTTTGATGCGGAAGAATATATAAAATTGGTGAAGAAGCATGGCTTGGAAATTTCACAACCTGGTTTGGAACCTACCAGAGGGTTGACATGGCAGATGACAAAGAAAAGGGATGATCTTGAAGTTCATAAAGATACTTCGGAAAGGGCAGGATGGTGCACGGAGCCGAATTTGCCTCCCTGTGCCGCTTTTGTAGAGATCATGGCTCCAGTGTTCTCACGAGATGCTTGGCGCTGTGTCTGGTATATGATTCAAAACGATTTAATCCATGGGTGGGGTCTTGATTTTTCCATTAGAAAATGTGTGGAGCCTGCACATGAGAAGATCGGAGTTGTAGACGCTCAGTGGATTGTTCATCAAGGCCTTCCCTCGCTCGGGAGCCAGGGAGAAACTCAAAATGGGAAAGCGCCATGGCAAGGGGTGAGAGAAAGATGTCGGAAGGAGTGGACGATGTTTCAAAGTCGGTTAGCGAATGCGGAGAAAGCGTACTTCAAGTCATTGGGGATTGATCCTTCAAATTCAGCCAAACATTAG 1206 44.03 MGILYRSSVNRKPNDSMRLIIVTFVGVFLGFFIGISFPTLSLTKLGVPSGLIPKIDRMYNADLKSASSIQAPKRFPSRGGRDLKNSQNLNGTSEIWVPSNPRGAERLAPGIVAAESDFYLRRLWGNPSEDLTSKPNYLVTFTVGYNQRDNIDKAVKKFSENFTILLFHYDGRTTEWDDFEWSKRAIHVSARKQSKWWYAKRFLHPDIVAPYDYIFMWDEDLGVENFDAEEYIKLVKKHGLEISQPGLEPTRGLTWQMTKKRDDLEVHKDTSERAGWCTEPNLPPCAAFVEIMAPVFSRDAWRCVWYMIQNDLIHGWGLDFSIRKCVEPAHEKIGVVDAQWIVHQGLPSLGSQGETQNGKAPWQGVRERCRKEWTMFQSRLANAEKAYFKSLGIDPSNSAKH 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10317529 10321335 - Carg14306-RA Car04g01799 147224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01799 401 Pfam Protein of unknown function (DUF707) 99 385 IPR007877 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01799 - - - csv:101222926 757.673
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01799 Car18g00695 CCT
Car04g01799 Car18g00695 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01799 Car-Chr4:10317529 Car15g00348 Car-Chr15:1851733 0 dispersed
Car12g00029 Car-Chr12:145274 Car04g01799 Car-Chr4:10317529 0 wgd
Car18g00695 Car-Chr18:8177021 Car04g01799 Car-Chr4:10317529 4.30E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g637 Blo01g00832 Blo16g01175 Bda01g01741 Bda11g01291 Bpe13g00510 . Bma14g01823 . . Cmo18g00765 . Cma18g00760 . Car18g00695 Sed06g1694 Cpe09g00537 Cpe01g01572 Bhi07g01795 Tan04g0159 Cmetu10g0724 . Hepe10g0049 . . Cla05g02591 Cam05g2782 Cec05g2818 . Clacu05g2784 Cmu05g2632 Cre05g2748 Cone13ag1081 Cone19ag1069 Cone8ag0694 . Lsi04g00600 Csa05g02283 Chy10g00849 Cme10g00581 . . Bda07g01639 Bda11g01291 . Bpe02g01915 Bma01g00541 . . Cmo04g02803 . Cma04g01775 . Car04g01799 . . . . . . . . . . . . . . . . . . . Chy09g00373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000341 6 5 4 6 6 4 7 3 4 4 4 4 6 3 3 7 4 6 5 4 4 4 4 3 3 3 4 8 3 3 134
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01799 Car_Chr04 FPKM 1.67777 1.76993 12.336354 12.206847 17.08901 18.652975 16.993427 0.703888 0.924686 0.840167