Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01821 ATGGCTCAAGCTGTGTCGAATCTGACTCGATTCGTCTCCTTCACGCCTGGGAGAGTCTCTAATGATCCGAAGAAGCTTAAAGGATTTGCTCGTAGAAGTTGCATTAAAGCTATGGCGGGGGATGGCAGAGATAATCTCGATCATCTGCAGAAAATTCCTAGGAAGGAACAACGAACGACTCAGCCACCAAAGAAACGAGTCGCTCCTGTTGCTCCTGTTGGGCTTTGGGATCGATTTCCGACGGCGAGAACAGTGCAGCAAATGATGGAAACAATGGAGAGGATTATGGATGATCCATTTGCTTACTCCGGGGCATGGCCATCACCGCCATTTTCGAGCGATGGAGCGGGGTACAGCAGGGGAAGAACTCCATGGGAGATTAAGGAAGGGGAAAATGAGTACAAGATGAGGTTCGACATGCCAGGTATGACGAAGGATGATGTGAAGGTGTGGGTGGAGGAGAAAATGCTGGTTGTGAAGGCTGAGAAGGTGAAGAAGACCAGTTCAGAAAATGGGAAGGTAGGAGGAGGAGAAGAAGAAGAAGAAGGAGATTGGTCTGCTAAGAGCTATGGAAGATACAGTAGCAGAATTGCATTGCCTGAGAATGTTCAATTTGAGCAGATCAAAGCAGAGGTAAAAGATGGGGTTTTGTACATAACAATTCCAAAGGCTGTTGTAACGAGTAAAATTGTAGATATCAATGTTCAGTGA 711 46.55 MAQAVSNLTRFVSFTPGRVSNDPKKLKGFARRSCIKAMAGDGRDNLDHLQKIPRKEQRTTQPPKKRVAPVAPVGLWDRFPTARTVQQMMETMERIMDDPFAYSGAWPSPPFSSDGAGYSRGRTPWEIKEGENEYKMRFDMPGMTKDDVKVWVEEKMLVVKAEKVKKTSSENGKVGGGEEEEEGDWSAKSYGRYSSRIALPENVQFEQIKAEVKDGVLYITIPKAVVTSKIVDINVQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10556562 10557640 - Carg14284-RA Car04g01821 147246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01821 236 Pfam Hsp20/alpha crystallin family 126 233 IPR002068 -
Car04g01821 236 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 116 236 IPR002068 -
Car04g01821 236 MobiDBLite consensus disorder prediction 167 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01821 K13993 HSP20; HSP20 family protein - csv:101208128 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01821 Car-Chr4:10556562 Car15g00933 Car-Chr15:6671606 2.19E-35 dispersed
Car16g01077 Car-Chr16:9255710 Car04g01821 Car-Chr4:10556562 4.74E-08 dispersed
Car04g01821 Car-Chr4:10556562 Car06g00694 Car-Chr6:4212766 4.07E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1127 . . . . . Bpe10g00774 . . Cmo04g01905 . . . . . Sed01g3445 . Cpe01g01592 Bhi07g01860 Tan04g0105 Cmetu09g1622 Lac13g0095 Hepe10g1551 . . Cla05g02629 Cam05g2820 Cec05g2855 Cco05g2888 Clacu05g2823 Cmu05g2671 Cre05g2788 Cone13ag1110 Cone19ag1098 . . Lsi04g00644 . . . Blo06g00817 . . . . . . . . . . Cma04g01808 . Car04g01821 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012314 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01821 Car_Chr04 FPKM 4.017609 4.433161 0.92866 0.739603 7.349307 9.204436 7.502664 2.376262 1.806501 1.934927