Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01836 ATGGATGTTCCGGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAGCTCGCTGCAATTTATGGTCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCGTTACATGTTGCTCTTGAGAAGGCCAAGAATACTCTTCGGCATTGCTCGGAGTCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAGAAGGCAAGATGTTCTCTTGAAGCTAGTCTTATATGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCCAATAGTGAACGAACTCAAGGACACTGTTTTCTTACTCGATCCACTCGAGAAACAGGTTGGTGATGATATCATTGCACTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCACAATGAGCTAGAGCATTTTCATATGGCTGCCACGAAACTTGGAATTACCTCATCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTATCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGGTATTGGATGACACCGACTCACAGGGTGGATCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTACAGCAAACGGTCAAGCCTTTGAACAGCAGCTTTCAAAGCTTAGTTCCTTTAATTTCAAGCCAAATTATAGGACATCAGGGAAGATGCCTCTGCCACCCGAGGAGTTGAGGTGTCCAATATCATTGCAGCTAATGTACGACCCTGTTATAATTGATTCTGGGCAAACATATGAAAGGATCTGCATAGAAAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAGACCCAACAGAGGCTCTCCCACCTGTCTATGACGCCTAATTATTCTGTGAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGTGTTCCGATCCCTGATGGTCCACCGACGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCTGGAACATCAAGATCTGTGGACAATGTTGGTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAAGAAAGTGGATCAATTAAAGTTGATGAAGAAAATGAAGCAGATGATAATACATGCACGGAGGAGTCGTCTAATTTCATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACTGAAGAGGGAGACTTGAGAACAAAATGTAGGGTTGTGGAGCAGATAAGACTTGCACTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGGTGATGCTCAGGAAAGTGGAGCCATGGCTCTATTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATTGCAGCGGGTGTAATCTCGTTATTAGAGAACATGATTTTGAAAGCCAATTTACATGGACCTGCAACAGCTCTGTATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCCATCATTAGTTCGAGTAGAGCCGTTCCTTTCCTGATCCAGCTGCTTACTCGTAACGGCGAATCCCAAACCAAGCTCGATGCACTTCATACCCTCTATAACCTTTCAACCACGCCCTCCATCATTCCTGTTCTTCTCTCCGCTGGTGTTATCGCTGGACTTCAATCCTTCATCGCAGCTCCAAGCGACAGCACGTGGACAGAGACTTCCTTAGCTATCTTAATAAACATAGCTTCAACCCAGTTGGGTATAGAACAAATAACTTCGGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGACGCCGGCGAACGTGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGACTTTGTGTAGAGGGAGTGAAAGATGCAGTCAAATGGTGTTACAAGAAGGAGTGATTCCAGGATTGGTGGCAGTTACAGTAAATGGGAGTTCAAGAGGGAAAATAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGACACAGCCGATACCATTCAGCAGCGAGATGGAAATAGCGACGCAGCAGCCATGGCTGCTCCAGACTATAAGCCATTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCTTTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTCTACCAATGTTGA 2313 43.54 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEASLICVEDIVSQSIGFQIQPIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHMAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSEVLDDTDSQGGSTPCSPTVRCSLEDNGLTANGQAFEQQLSKLSSFNFKPNYRTSGKMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSMTPNYSVKGLIANWCEHNGVPIPDGPPTSLDLNYWRLALSDSESGTSRSVDNVGGSHTLKEVKVVPLEESGSIKVDEENEADDNTCTEESSNFITLESCVNFMTVLTEEGDLRTKCRVVEQIRLALKDDDEARILMGANGFAEALMEFLTLALIEENGDAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKANLHGPATALYLNLSCLEDAKPIISSSRAVPFLIQLLTRNGESQTKLDALHTLYNLSTTPSIIPVLLSAGVIAGLQSFIAAPSDSTWTETSLAILINIASTQLGIEQITSAPELISGLAAIVDAGERAEQEQAVSCLLTLCRGSERCSQMVLQEGVIPGLVAVTVNGSSRGKIKAQKLLMLFREQRQKDTADTIQQRDGNSDAAAMAAPDYKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10633185 10638403 - Carg14269-RA Car04g01836 147261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01836 770 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Car04g01836 770 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01836 Car18g00655 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01836 Car-Chr4:10633185 Car16g00655 Car-Chr16:4158012 3.19E-77 dispersed
Car12g00061 Car-Chr12:256711 Car04g01836 Car-Chr4:10633185 0 wgd
Car18g00655 Car-Chr18:7816975 Car04g01836 Car-Chr4:10633185 0 wgd
Car04g01836 Car-Chr4:10633185 Car05g00070 Car-Chr5:365427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01836 - - csv:101210079 1369.76