Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g01861 | ATGGAGACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTCGGAAGAACACGAATTCTTCTGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTCAAATGGGTTACAGGTCCATGGTTCGGCCTTTTCTATTTTTATTTGTTTATACTTGCTCAAAGTTTTTTTTCCTCTTGTTTTTGCTTAGAGGATACATTGAAGGCACTAAAGGAGAAGTCAAAACAGTCGGAAGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGATGGCTGTGGAAAGAAATTTTTGGATAGCTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATTCCCTGATTGTGGAAAGAGATTTGCACACGAGTACAAATTGAAGAACCACGTTACATCTCACCATGAAAAGAATGCGACAACTGAAGTGGTCAAATATACCCCACCTTTCGAGAAGCAAACTAAGGCTTCTAAACCTTCTGGGGGAGCTTCTGCTTCGGCATCATCTGACCGTCCACACGCTTGCCCCTATGAAGGGTGTGAAAAGGCGTACATCCATGAGTACAAGCTTAAACTCCATTTGAAAAGGGAACACCCTGGACATTTTGTAGAAGACAATGGCAATGCTCCACACAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGCTATGGCCGAAAACGGGTAAATGTAAAAAGCCAGAAACGGAACAGGCCTAAACCAAACTTGAAGTTACCGCCTTCGAAAGTAGCACAGCGAAAAGGCGCAATGCCATCTCCTGCCCCAATGAGTGCTGCAGTTAAAAAATCATGGCGGGTTAAAGAAGAAAACTACGAAGAAGAAGAAGAAGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGGCTGGGGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA | 1197 | 42.77 | METHFNHNLFDRRPIRKNTNSSVKWIKEWVPQDVVATGGKCFLFKWVTGPWFGLFYFYLFILAQSFFSSCFCLEDTLKALKEKSKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPFPDCGKRFAHEYKLKNHVTSHHEKNATTEVVKYTPPFEKQTKASKPSGGASASASSDRPHACPYEGCEKAYIHEYKLKLHLKREHPGHFVEDNGNAPHNGENEIEASDQDGYGRKRVNVKSQKRNRPKPNLKLPPSKVAQRKGAMPSPAPMSAAVKKSWRVKEENYEEEEEEEDSEETEEDRENVEGWGYAENEDDDEETEYED | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10777298 | 10781606 | - | Carg24413-RA | Car04g01861 | 147286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g01861 | 398 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 191 | 220 | IPR013087 | - | |
Car04g01861 | 398 | Coils | Coil | 355 | 380 | - | - | |
Car04g01861 | 398 | MobiDBLite | consensus disorder prediction | 281 | 398 | - | - | |
Car04g01861 | 398 | MobiDBLite | consensus disorder prediction | 234 | 248 | - | - | |
Car04g01861 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 256 | 279 | IPR013087 | - | |
Car04g01861 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 133 | 155 | IPR013087 | - | |
Car04g01861 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 104 | 126 | IPR013087 | - | |
Car04g01861 | 398 | Pfam | Zinc finger, C2H2 type | 161 | 185 | IPR013087 | - | |
Car04g01861 | 398 | MobiDBLite | consensus disorder prediction | 297 | 311 | - | - | |
Car04g01861 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 163 | 185 | IPR013087 | - | |
Car04g01861 | 398 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 161 | 190 | IPR013087 | - | |
Car04g01861 | 398 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 131 | 160 | IPR013087 | - | |
Car04g01861 | 398 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 102 | 131 | IPR013087 | - | |
Car04g01861 | 398 | MobiDBLite | consensus disorder prediction | 384 | 398 | - | - | |
Car04g01861 | 398 | MobiDBLite | consensus disorder prediction | 359 | 377 | - | - | |
Car04g01861 | 398 | MobiDBLite | consensus disorder prediction | 213 | 254 | - | - | |
Car04g01861 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 193 | 216 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01401 | Car-Chr4:8127395 | Car04g01861 | Car-Chr4:10777298 | 3.60E-06 | dispersed | |
Car04g01861 | Car-Chr4:10777298 | Car13g00624 | Car-Chr13:7926930 | 1.16E-11 | dispersed | |
Car18g00602 | Car-Chr18:7096565 | Car04g01861 | Car-Chr4:10777298 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3402 | PF00096 | zf-C2H2 | 0.0004 | CL0361 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g01861 | - | - | cmax:111492851 | 659.833 |