Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01861 ATGGAGACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTCGGAAGAACACGAATTCTTCTGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTCAAATGGGTTACAGGTCCATGGTTCGGCCTTTTCTATTTTTATTTGTTTATACTTGCTCAAAGTTTTTTTTCCTCTTGTTTTTGCTTAGAGGATACATTGAAGGCACTAAAGGAGAAGTCAAAACAGTCGGAAGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGATGGCTGTGGAAAGAAATTTTTGGATAGCTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATTCCCTGATTGTGGAAAGAGATTTGCACACGAGTACAAATTGAAGAACCACGTTACATCTCACCATGAAAAGAATGCGACAACTGAAGTGGTCAAATATACCCCACCTTTCGAGAAGCAAACTAAGGCTTCTAAACCTTCTGGGGGAGCTTCTGCTTCGGCATCATCTGACCGTCCACACGCTTGCCCCTATGAAGGGTGTGAAAAGGCGTACATCCATGAGTACAAGCTTAAACTCCATTTGAAAAGGGAACACCCTGGACATTTTGTAGAAGACAATGGCAATGCTCCACACAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGCTATGGCCGAAAACGGGTAAATGTAAAAAGCCAGAAACGGAACAGGCCTAAACCAAACTTGAAGTTACCGCCTTCGAAAGTAGCACAGCGAAAAGGCGCAATGCCATCTCCTGCCCCAATGAGTGCTGCAGTTAAAAAATCATGGCGGGTTAAAGAAGAAAACTACGAAGAAGAAGAAGAAGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGGCTGGGGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1197 42.77 METHFNHNLFDRRPIRKNTNSSVKWIKEWVPQDVVATGGKCFLFKWVTGPWFGLFYFYLFILAQSFFSSCFCLEDTLKALKEKSKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPFPDCGKRFAHEYKLKNHVTSHHEKNATTEVVKYTPPFEKQTKASKPSGGASASASSDRPHACPYEGCEKAYIHEYKLKLHLKREHPGHFVEDNGNAPHNGENEIEASDQDGYGRKRVNVKSQKRNRPKPNLKLPPSKVAQRKGAMPSPAPMSAAVKKSWRVKEENYEEEEEEEDSEETEEDRENVEGWGYAENEDDDEETEYED 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10777298 10781606 - Carg24413-RA Car04g01861 147286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01861 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 220 IPR013087 -
Car04g01861 398 Coils Coil 355 380 - -
Car04g01861 398 MobiDBLite consensus disorder prediction 281 398 - -
Car04g01861 398 MobiDBLite consensus disorder prediction 234 248 - -
Car04g01861 398 ProSitePatterns Zinc finger C2H2 type domain signature. 256 279 IPR013087 -
Car04g01861 398 ProSitePatterns Zinc finger C2H2 type domain signature. 133 155 IPR013087 -
Car04g01861 398 ProSitePatterns Zinc finger C2H2 type domain signature. 104 126 IPR013087 -
Car04g01861 398 Pfam Zinc finger, C2H2 type 161 185 IPR013087 -
Car04g01861 398 MobiDBLite consensus disorder prediction 297 311 - -
Car04g01861 398 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Car04g01861 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 190 IPR013087 -
Car04g01861 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 160 IPR013087 -
Car04g01861 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 131 IPR013087 -
Car04g01861 398 MobiDBLite consensus disorder prediction 384 398 - -
Car04g01861 398 MobiDBLite consensus disorder prediction 359 377 - -
Car04g01861 398 MobiDBLite consensus disorder prediction 213 254 - -
Car04g01861 398 ProSitePatterns Zinc finger C2H2 type domain signature. 193 216 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01401 Car-Chr4:8127395 Car04g01861 Car-Chr4:10777298 3.60E-06 dispersed
Car04g01861 Car-Chr4:10777298 Car13g00624 Car-Chr13:7926930 1.16E-11 dispersed
Car18g00602 Car-Chr18:7096565 Car04g01861 Car-Chr4:10777298 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3402 PF00096 zf-C2H2 0.0004 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01861 - - cmax:111492851 659.833