Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01920 ATGGAGCTCACTACTCAAGATCATCCCATTCCCATCCCCATCCCTTTAAATAGTCGCTACGGTGGCCACGACCACGACCACGACCATGTCATCCATCACCATGACCCGTCCGCCGCTTGCAACCATATCATCGCGGCGGCGGTCAATGGCGGTAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCATAATCCTAACAACAGCAACAACAATAACAATAACACGAAGAAGCAGGTAAAATATAAGGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACAGATGGGTGTGGTGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCACTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTACGATTGGCTCCACCACCCTCGACTCGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCCGCGGCGGGGCCGGCGTTCATATCTTCTAGAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCGGAGGAGCATGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGAGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCTGAGAAAGTTGGATGGAAGATTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCCCCTCCACATTCTCCTACTCCCTTAACTTAA 882 51.25 MELTTQDHPIPIPIPLNSRYGGHDHDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNPNNSNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11409919 11410800 + Carg26173-RA Car04g01920 147345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01920 293 Pfam ZF-HD protein dimerisation region 80 133 IPR006456 -
Car04g01920 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 132 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01920 Car-Chr4:11409919 Car06g00004 Car-Chr6:53289 1.89E-136 dispersed
Car15g00270 Car-Chr15:1466885 Car04g01920 Car-Chr4:11409919 9.58E-20 dispersed
Car04g01920 Car-Chr4:11409919 Car12g00442 Car-Chr12:2802897 4.41E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3405 PF04770 ZF-HD_dimer 1.20E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01920 - - bhj:120068944 473.781