Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01924 ATGTCCTTTTCAGCTGCCTCGAATCTTCCCTCAGGAGGACCCCATTCAGGGTCCTCTTCTGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCTCTTGTCACCCTTCCTCGCCAAGACGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCCTCGATGAATCAAGGATTGGAGCAACAAATGCCTTCATTCAACCTAGCATCAAAAATACTTTGTAAAGTTGTTAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTTTATGCTCAGATAACTCTGTTACCAGAAAGCAATCAAAGTGAAGTAACGACCCCAGATCCTGCACTTCCTGAGCCGACAAGATGTAACGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCCGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTAGCAACTGATTTACATGGGAATCAGTGGCATTTTAGGCACATTTTCCGAGGTCAGCCAAGGCGTCATTTACTAACAACTGGGTGGAGCGTCTTCGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAACGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAACAACATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTGTTGCAACTGGAACGCTCTTTTCTGTCTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTCGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCACCTGGGTGGGCTAATTCTGATTGGCGATCTCTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAACCCCTTGTTGCTTCGAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGTCCACGGCCAACTGTTTTGCCTTCACCTACGGCCGATGCAGCTGTACTCGGCGGGTGGAAACCTACGGTTGAATCTTCTGCCTTTTCGTTTACTGAGCCACCACAGCGTGGAAGGGACGTGTATTCATCACCGAAGTTCAGTACTGCTGCTTCGAATTCTCTTGGTTTTAATGGGAATAGTTCTCTTGGCGCTGTGTCGAGCAACAACTACTGGTCTAATACCAATAGGGTGGAAAATATTATTGACACTTCATCTCATGGAGCTAACAGGGAACCCATTGAAAAGAAACAAAACACTAGAAATGGGTGCAGGCTTTTCGGGATCCAGCTTCTTGGAAATTCCGATGTCGGTGAAGCTTCTCCAGATACAACTCCTAAAATGGTCAGTGAGGATAGGTCGGTTCCACCAGTAGACACGGAATTCGACCAGAATTCTGAGCGATCAAACGTTCACCGATTAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCATGTTTGATTTCCCCACTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACGAAGGTTCATATGCAAGGAATTGCCGTTGGGAGGGCCGTTGATTTAACACGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGATGAAGATGATATGATGATGGTTGGAGACGATCCATGGAACGAGTTCGTCAGCATGGTAAGGAAGATATTCATCTACACGACCGAAGAAGTGAAGAGACTGTCGCCCAAGATAAAACTCCCCCTCGGTGGAGAGACAAAGCTTAGTAAGCCAGATTCCGATACGACTGCCAACCACACAGAGGATCAGTCGTCCATCGTCGGGGGTCGATCGAATGGAATCTGTAACAAGGCGTTCGTATATTTTCACTTGGAAACTCCGAAGATTCCAACGACGACAAAGCTAGCTGCAGGAGCTGCTACATATATGAAGGGGGTTGGGGAGTCTGTTTTTGTATGGGCTGTGGATGATAATGGAGGGAGGAAGAAGCTCAAAACATCTTCCATGCTTCCAATGTAA 2223 46.2 MSFSAASNLPSGGPHSGSSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMNQGLEQQMPSFNLASKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTTPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAVATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPTADAAVLGGWKPTVESSAFSFTEPPQRGRDVYSSPKFSTAASNSLGFNGNSSLGAVSSNNYWSNTNRVENIIDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSDVGEASPDTTPKMVSEDRSVPPVDTEFDQNSERSNVHRLDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFVSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLSKPDSDTTANHTEDQSSIVGGRSNGICNKAFVYFHLETPKIPTTTKLAAGAATYMKGVGESVFVWAVDDNGGRKKLKTSSMLPM 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11510297 11518403 + Carg26177-RA Car04g01924 147349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01924 740 MobiDBLite consensus disorder prediction 489 519 - -
Car04g01924 740 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Car04g01924 740 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Car04g01924 740 Pfam AUX/IAA family 554 644 IPR033389 -
Car04g01924 740 ProSiteProfiles PB1 domain profile. 554 647 IPR000270 GO:0005515
Car04g01924 740 MobiDBLite consensus disorder prediction 651 676 - -
Car04g01924 740 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g01924 740 MobiDBLite consensus disorder prediction 362 378 - -
Car04g01924 740 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01924 Car-Chr4:11510297 Car16g00472 Car-Chr16:3011343 0 dispersed
Car04g01924 Car-Chr4:11510297 Car02g00671 Car-Chr2:5010194 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3406 PF02309 AUX_IAA 5.20E-12 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01924 K14486 - csv:101204612 1260.36