Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g01944 | ATGGCACTGGTGATACACGCAGGAAAGACGAATAAAAATTCTTTCAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAATTGATCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAATTTATCAAGATGAACCCTATTGGGAAGGTTCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGCAATGCAATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTTTGGTTCATCTTCGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTAGAGATAGATCCTAATATTTTGACTTGGTATAGACCTAGAATTGGGAGAGCTGCTTATCTTCCACCTGTTGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACGCACCTTGCTTCAAACACATACCTAGTTGGTCATTTTGTAACATTAGCTGACATCATCATGACTTGCAACCTCTTATTGGGTTTTACTAAGTTAATGACCAAGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGGTACTTCTGGACCTTAGTCAATCAACCAAACTTCAAAAAAATTCTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCCACCTGTTCAATCTGCTAAGAAACCTGATGAATCTGCTAAGCAAAAGCACAAAGATGAGGTAAAGAAAGAACCTAAAAAGGAAGCAGAAAAAGAGAAGCCCAAGGCGGTAGTTGGCGAGGGAGAGGATGAGGCACCAAAGCCTAAACCCAAAAATCCTCTCGATTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTGTACTCGAATACCAAAACCAACTTCCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGCGATTACAAGTACGACGATGAGAATACTGTTTCGTTCGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGGATGGATCTCGCACGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCCGAACCTCCATTTAAGGTGAAGGGATTGTGGCTGTTCCGTGGGCAAGAGATCCCAAAGTTCGTCCTGGACGAGTGCTATGACATGGAACTGTATGAATGGAGGAAGGTGGATATATCAGACGAGGCACAAAAGGAACGCGTGAACCAGATGATTGAAGATCATGAGCCTTTTGAAGGAGAGGCTTTGTTGGACGCCAAATGCTTCAAGTGA | 1269 | 44.05 | MALVIHAGKTNKNSFKALIAAEYNGVEVKLIPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLFGSSSIDYGHIEQWIDFASLEIDPNILTWYRPRIGRAAYLPPVEEAAIAALKRALGALNTHLASNTYLVGHFVTLADIIMTCNLLLGFTKLMTKSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVPPVQSAKKPDESAKQKHKDEVKKEPKKEAEKEKPKAVVGEGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYDDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDHEPFEGEALLDAKCFK | 422 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12571068 | 12574071 | - | Carg24965-RA | Car04g01944 | 147369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g01944 | 422 | Pfam | Glutathione S-transferase, C-terminal domain | 128 | 197 | IPR004046 | - | |
| Car04g01944 | 422 | Pfam | Glutathione S-transferase, N-terminal domain | 11 | 76 | IPR004045 | - | |
| Car04g01944 | 422 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 262 | 422 | IPR001662 | GO:0003746|GO:0006414 | |
| Car04g01944 | 422 | Pfam | Elongation factor 1 gamma, conserved domain | 261 | 369 | IPR001662 | GO:0003746|GO:0006414 | |
| Car04g01944 | 422 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 82 | IPR004045 | - | |
| Car04g01944 | 422 | MobiDBLite | consensus disorder prediction | 210 | 269 | - | - | |
| Car04g01944 | 422 | MobiDBLite | consensus disorder prediction | 221 | 262 | - | - | |
| Car04g01944 | 422 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 87 | 215 | IPR010987 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01944 | Car-Chr4:12571068 | Car06g00742 | Car-Chr6:5037073 | 0 | dispersed | |
| Car04g01944 | Car-Chr4:12571068 | Car04g00833 | Car-Chr4:4864965 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g01944 | K03233 | - | zju:107412556 | 710.294 |