Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01952 ATGATGGAAGATCATCCCAAACGACAGCTGAAGGCTACAAACATTATGGCAAATAAAACCCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCCGACTTGGAGACGATCACATGCAAAACTTGCGTCACCCCTTGGCACGTCGATTGTCTCTCAAGTCCCCTTGAAACCCTCGCATCAACCCTTCAATGGGACTGTCCCGATTGTTCCTCCCCTCCCGAAGATGTTTCCCTTCCTCCGCTCGGCAACAATCCACTCCCCACTACGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCTGATGTCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAGGAGCTTCTCAGCGGAAAGTTGCAGTCCGACAAGGATGATCCTGATGCCAACAAGGAAAAGACAAAAAAGGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTTATACCCTCCAAAATGGCTAGCCAGCCCCGTATAAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTAGTTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGACAAAGCCTATACCACTGACCGGGCACAAAGAAATGGGAAGGCTAATGCTGCCAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCCATTCCTGCTGAAAATGATCCCGAGAGAAACCAGGGTGTTCTGGTCGGTGAATGCTGGGAGGATCGGCTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATCAAACCAAGCGCTACAAGTTAGTTGCTTGAAGGGCTATCCTGTTAGGGTTGTTAGTAAAGCTACAACTGTTTTGGTTGAGCATGTTAAAGTGTTTTTCCATATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGGCTTTAAGGTGTGTCGCTATTTATTTGTTAGATGCGACAATGAGCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTAAAATTTCGGAGTTGAAAAAAGCGACGGATATTACGGAGAGGAAGGGAGGATCCTCATGGGACTTTGATGAGAGCGATAGTCGATGGAAATGGAGCAAAGCTCCACCAACGAGCAAGAGACCAGTTGAAGCCGAAGATTCTGCTTCTGGGAAGAGGAGAAAAATTAGGCAATCGCGTAACATGAGTGTCCGAGAAAGGTTACTAAAAGAGTTTAGCTGCCGTATTTGCCGGGAGGTGATGAGTTTGCCAATCACTACACCTTGTGCCCATAACTTCTGCAAGCCATGCTTGGAAGGTGTTTTTGTGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGCGGACGGGCTCTTAGATCCCAAAAGAATGTCATGAATTGTCCTTGTTGCCCCACCGATATATCTGATTTTCTACAAAATATTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCACTGAAAAGTAAGGTCGAAGAATGGGATGCATCTGAGAAGCTCTGTGAAGAAGTGATAGATGAGGAAGAGGAGGGAAAGGAGGGAAAGGATGGAAGCACTGGAAATGAAAGCAGCAGTTCAGTAGAAACAACAAGAAAGCGAGCAAAGGTGGATGATTTAGAATGA 1986 46.48 MMEDHPKRQLKATNIMANKTQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVDCLSSPLETLASTLQWDCPDCSSPPEDVSLPPLGNNPLPTTPSSDLVAAIRAIEADVSLTDREKAKKRQELLSGKLQSDKDDPDANKEKTKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSLVSGGPQKVYHFVHNQNRPDKAYTTDRAQRNGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNQALQVSCLKGYPVRVVSKATTVLVEHVKVFFHISQRKAFLICSREGIAGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPKISELKKATDITERKGGSSWDFDESDSRWKWSKAPPTSKRPVEAEDSASGKRRKIRQSRNMSVRERLLKEFSCRICREVMSLPITTPCAHNFCKPCLEGVFVGKTFLRERSSGGRALRSQKNVMNCPCCPTDISDFLQNIQVNRELLDVIESLKSKVEEWDASEKLCEEVIDEEEEGKEGKDGSTGNESSSSVETTRKRAKVDDLE 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12967132 12972568 - Carg28100-RA Car04g01952 147377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01952 661 ProSiteProfiles YDG domain profile. 288 434 IPR003105 -
Car04g01952 661 Pfam RING-type zinc-finger 528 568 IPR027370 -
Car04g01952 661 Pfam Zinc finger, C3HC4 type (RING finger) 160 198 IPR018957 GO:0046872
Car04g01952 661 Pfam SAD/SRA domain 291 437 IPR003105 -
Car04g01952 661 ProSitePatterns Zinc finger PHD-type signature. 30 75 IPR019786 -
Car04g01952 661 ProSitePatterns Zinc finger RING-type signature. 543 552 IPR017907 -
Car04g01952 661 MobiDBLite consensus disorder prediction 626 661 - -
Car04g01952 661 MobiDBLite consensus disorder prediction 442 485 - -
Car04g01952 661 ProSiteProfiles Zinc finger RING-type profile. 528 584 IPR001841 -
Car04g01952 661 ProSiteProfiles Zinc finger RING-type profile. 160 199 IPR001841 -
Car04g01952 661 Coils Coil 598 618 - -
Car04g01952 661 MobiDBLite consensus disorder prediction 442 514 - -
Car04g01952 661 ProSiteProfiles Zinc finger PHD-type profile. 27 78 IPR019787 -
Car04g01952 661 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01952 Car-Chr4:12967132 Car14g01658 Car-Chr14:13235930 5.05E-14 dispersed
Car04g01952 Car-Chr4:12967132 Car11g00004 Car-Chr11:19736 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01952 K10638 - csv:101219001 1071.23