Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01957 ATGCGAAGTGGGAACTTGACTTGCATATCGTCCAGTGAGAGCGCGTGTTTGGAGGGTGATGAAGAAGGAGAAGGAGGAGAAGACTCTATTTTCCTTTCTCTTTGTCCGCCAGGCCAACGCCACACAGTTTCTTCCAAACACCGACAACTCCAAAACAAACAAATTCCTGTTAGCCCTAATTCCTCTCTCCAAAACCCTAATATTCTTCATCATCAACATGCTGCTGTCACCGTCGCTATGCATATTGGTCCCCCTGCCACCGCCGCCGCCACCGAATCCAACGACGTCTCCGCTGCCCGCCCGGTTGATGGCCAGTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCACAATACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGTGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGGAGAGACAATATGGCTGACAAAAGGGTCAGGGAAGTCACAGATTGTACTGTTGATGGGTGGGTTTGCAATTCCAGAGAAAGGAGAAAAAGAGAAGAGCTTGGCAGTGGCGTCAGTGAGAGTGAGTCTAAGTAAGACTACCACTACTACTACTACTAACACTTTCAACCACAGGTTTACCCCATTGTGTCAGCCCAGAGGTTTAAAGACAGGAGAGGACCAGTGGGTTTAG 1071 47.71 MRSGNLTCISSSESACLEGDEEGEGGEDSIFLSLCPPGQRHTVSSKHRQLQNKQIPVSPNSSLQNPNILHHQHAAVTVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHGETIWLTKGSGKSQIVLLMGGFAIPEKGEKEKSLAVASVRVSLSKTTTTTTTNTFNHRFTPLCQPRGLKTGEDQWV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13407527 13409450 - Carg28275-RA Car04g01957 147382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01957 356 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Car04g01957 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01957 Car-Chr4:13407527 Car07g01248 Car-Chr7:7736991 9.60E-106 dispersed
Car13g00196 Car-Chr13:2240416 Car04g01957 Car-Chr4:13407527 4.44E-26 dispersed
Car04g01957 Car-Chr4:13407527 Car03g00088 Car-Chr3:1119536 2.93E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3409 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01957 - - mcha:111022346 454.521