Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01965 ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTACTTCTTTGTATATATTTAGAGTGCAGTAATGTTGTAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTACCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGCAGTGTAGCTGCTCTGGGCTGGTGGGATTTATTTATAAATTACTGTATAGCGGAATGCTTCGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCATTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGTTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGGAACCCCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCCCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTCAATAGAAAAAATTATAATTTTGCTAGTTGGTTCACCTACCTCTGTAAGATATCTTGATATAAGGTCGAAGGCTCGTGAACTGTTAGGGTTCATGCACCATGGATCGAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAGCTTTATTCTGCTGGAAATTCTGGGTATGATACTTTCACACCGGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAGCTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAG 1404 43.16 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVVDLKIVFVPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGSVAALGWWDLFINYCIAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSASYIPCLVLFSPLFLLQGVGSVFAAYRSIEKIIILLVGSPTSVRYLDIRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERLPVNDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13757793 13766021 - Carg14663-RA Car04g01965 147390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01965 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Car04g01965 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Car04g01965 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01965 Car-Chr4:13757793 Car11g00236 Car-Chr11:1328627 0 dispersed
Car04g01965 Car-Chr4:13757793 Car10g00236 Car-Chr10:1111406 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01965 - - vvi:100249082 693.73