Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01966 ATGAAGGAGGAAGGAGAGTGCTTTCAGGGGTTTCAAGAGCACCTCCTAATGCAACAATTCCAGACTATGCAACAAAACAGCGACGTTTTTGGAGTAGGAGGTGGAGGAGGAGGCTTGATTTTTCCTGAAGTTTCTCCTATGATGTTTACGCCTCCGTGGACCGCGACCACAACCATCCCTCAAGTCCACCACGACCCCTTCATCCCGCCGCCGCCCCCACCTTCCTACGCCAGCTTCTTCAATAGGAGAAATGCTTCTCTGCAGTTCCCTTATGATATTGGGAACAATAGCCTTGGAATTGGGCAGATGGGTCAGCCTGGGTCTGGCCCCTTTGGGCTGCAGGCCGAGCTGAGTAAGATGAGCGCTCAAGAAATAATGGACGCCAAAGCTCTTGCTGCCTCTAAAAGCCATAGCGAAGCTGAGAGACGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAGTACCACCAAAACGGACAAGGCATCCTTGCTTGCAGAGGTAATTCAACATGTAAAAGAGCTGAAACGCCAGACCACATTGATAGCTGATGTAAGTCCAGTTCCGACCGAGCTCGACGAGCTATCAGTTGACGTCGATGCATCGGACGAGGACGGGAAGTTCGTGATAAAAGCTTCACTTTGTTGTGAGGACAGGTCTGATCTTCTCCCACAGATCATTAAAACCCTGAAATCCCTCCGCTTGAGAACCCTAAAAGCGGAGATCACGACGCTGGGCGGCCGAGTAAAGAACGTATTGTTTATCACCGGCGACGACGACTCCTCCAGCGACCAAGAGGAGGCTGAACAGCAGCAGCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGGAGTGATGGAAAAGGTTTGTAGCGAAGACCAATCATCCTCAGGCAGCATCAAAAGACAAAGGACCAATAATCACAACAACGTCAATATTTAG 966 49.59 MKEEGECFQGFQEHLLMQQFQTMQQNSDVFGVGGGGGGLIFPEVSPMMFTPPWTATTTIPQVHHDPFIPPPPPPSYASFFNRRNASLQFPYDIGNNSLGIGQMGQPGSGPFGLQAELSKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSSDQEEAEQQQHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNVNI 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13795642 13797494 - Carg14662-RA Car04g01966 147391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01966 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Car04g01966 321 MobiDBLite consensus disorder prediction 298 321 - -
Car04g01966 321 MobiDBLite consensus disorder prediction 295 321 - -
Car04g01966 321 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01966 Car-Chr4:13795642 Car04g02786 Car-Chr4:21337069 1.49E-38 dispersed
Car06g00735 Car-Chr6:4866289 Car04g01966 Car-Chr4:13795642 1.29E-48 transposed
Car18g00972 Car-Chr18:10270636 Car04g01966 Car-Chr4:13795642 1.50E-110 wgd
Car04g01586 Car-Chr4:9186384 Car04g01966 Car-Chr4:13795642 4.39E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3411 PF00010 HLH 1.50E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01966 - - pvy:116145962 360.147