Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01990 ATGGCAGGGAGAAATCGCTCATCCCGCCACATTGATGGTTACCGAGTATCCCGTGATGTCCATAGACCTTACATAGACCGAGTACCAGCACCCCTGCCCATTCATCCTGCAGCTTTAGAGGAGGAACTTGACTTGCAACATCGAGAAATGCAGAGAATTATTTCTGATAACCGCATGGTTATTGATGATAATACAATACTTCAAAGGGAATTATCAGCTGCAAAAGAAGAAATTCACAGATTGAACCAGGCTATACCCAAAATTTTGAATGATAAAGAAGCACAATCCAGGGAGTTGCTTGAAAGAGGCTTGAAGCTAGAAGCTGAGCTTCGTGCTTCGGAGCCTTTAAAGTCTGAGGTTATGCAGTTAAGATCTGAGATTCAGAAATTGAATACTTTGAGGCAGGATTTGTCTTCTCAAGTCCAAAGCCTCACAAAGGATGTTACTCGATTGCAAGCTGAAAATCAGCAGCTAAATGCTATGAGAGCAGATATGGATGGATTGCACAAGGAGCTTATTGAGGCCAGGAGGGCTTATGAATATGAAAAGAAAGCCAATGAAGAACAAATTGAACAAAAGCAGGTGATGGAGAAGAACCTTGTTTCAATGGCTCGTGAAATAGAGAAACTGCGAGCAGAGAAGCTCAACATAGAGAGAGCACGGGGATTAGGTGCTGAGGGTTATGGGATCTTGAACAGAAGTCCTGAAATGAGATATGCAGGTGGTGCATATGGTAATAGCTATGGTAGTTCTTGGGCACCATATGAGAAGCGTAGCCGACGTTAA 786 43.13 MAGRNRSSRHIDGYRVSRDVHRPYIDRVPAPLPIHPAALEEELDLQHREMQRIISDNRMVIDDNTILQRELSAAKEEIHRLNQAIPKILNDKEAQSRELLERGLKLEAELRASEPLKSEVMQLRSEIQKLNTLRQDLSSQVQSLTKDVTRLQAENQQLNAMRADMDGLHKELIEARRAYEYEKKANEEQIEQKQVMEKNLVSMAREIEKLRAEKLNIERARGLGAEGYGILNRSPEMRYAGGAYGNSYGSSWAPYEKRSRR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15295321 15298699 + Carg16402-RA Car04g01990 147415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01990 261 Coils Coil 120 178 - -
Car04g01990 261 Coils Coil 186 220 - -
Car04g01990 261 PANTHER MYOSIN-LIKE PROTEIN 1 259 - -
Car04g01990 261 PANTHER PROTEIN FLX-LIKE 2 1 259 IPR040353 -
Car04g01990 261 SUPERFAMILY Myosin rod fragments 106 208 - -
Car04g01990 261 Coils Coil 64 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01990 - - - csv:101218774 468.003
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01990 Car15g00842 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01990 Car-Chr4:15295321 Car09g00600 Car-Chr9:3409438 3.78E-47 dispersed
Car15g00842 Car-Chr15:4870774 Car04g01990 Car-Chr4:15295321 1.14E-50 transposed
Car15g00841 Car-Chr15:4868631 Car04g01990 Car-Chr4:15295321 3.20E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g307 . Blo16g01063 . Bda11g01148 Bpe13g01347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01148 . . . Bma06g00758 . . . . . Car04g01990 Car15g00842 Cpe13g00417 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003698 1 1 1 1 1 1 3 1 1 1 1 1 0 1 1 0 1 0 2 1 1 1 1 2 1 1 1 5 6 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g01990 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car04g01990 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0