Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02002 TCTCTCTCTCTTCATTTCAGTTTCAGACCCATTTTCGCCACAAACTCTGTTCTGGGTATCATGATTTTCTCCCACAAAATGCAAGAAATTGCATTCAAAATGGGCTTCACTCTCTCCGATTTCGCCCACACTTTGGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTTTGGAGATTGTGACTCGCGCCATTGATTGTTGCAGGCATCACGTGTCGGAGACCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCTGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGGGTTTCTGATTCTGAACAACAACAACAACAACAACGACAACTGCCCTGTGAAACTCAGACGGAGAACACTGATGACTCTGATCGAAATAATTTGAATTTGTGTCCGTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGACCATTTCAGAAGGAGAAAATCGGTGGTGGAGGAACATCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGGAAGTAATCGACGGGAAGAAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACGACGACACCGCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGCATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCAACCACGAACGGAATTTACGCACCGGTGGTTAGGACGACGACCATGGCGAAGGCGAAGGCTATAGTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCGTCCTCCACACATACGTCATCAGTTTCACCTGCTTGA 1122 51.25 SLSLHFSFRPIFATNSVLGIMIFSHKMQEIAFKMGFTLSDFAHTLEQERRKVLMFQRELPLCLEIVTRAIDCCRHHVSETTTENRLSECSEQTSSDVGLVLEEFIPINRYGVSDSEQQQQQQRQLPCETQTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKIGGGGTSSTSAPAATSSTAEMGSGGSNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHDDTAQTPQFLVVGGIWVPAAEYATTSTGEAVRAATTNGIYAPVVRTTTMAKAKAIVSGGAAECNSATTSSSTHTSSVSPA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15542845 15544668 - Carg27343-RA Car04g02002 147427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02002 373 MobiDBLite consensus disorder prediction 214 232 - -
Car04g02002 373 MobiDBLite consensus disorder prediction 113 143 - -
Car04g02002 373 Pfam Myb-like DNA-binding domain 230 281 IPR001005 -
Car04g02002 373 MobiDBLite consensus disorder prediction 191 213 - -
Car04g02002 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 285 IPR017930 -
Car04g02002 373 MobiDBLite consensus disorder prediction 183 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02002 Car-Chr4:15542845 Car18g00967 Car-Chr18:10226071 1.03E-87 dispersed
Car12g01201 Car-Chr12:11449072 Car04g02002 Car-Chr4:15542845 1.43E-46 dispersed
Car15g00854 Car-Chr15:4960227 Car04g02002 Car-Chr4:15542845 5.58E-169 wgd
Car04g01570 Car-Chr4:9097331 Car04g02002 Car-Chr4:15542845 9.35E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3418 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02002 - - cpep:111786881 477.633