Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g02005 | ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCGTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAAGTAA | 969 | 42.21 | MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKKMAESK | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15667968 | 15671306 | + | Carg28243-RA | Car04g02005 | 147430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g02005 | 322 | ProSitePatterns | Zinc finger RING-type signature. | 278 | 287 | IPR017907 | - | |
Car04g02005 | 322 | SUPERFAMILY | CCCH zinc finger | 184 | 216 | IPR036855 | GO:0046872 | |
Car04g02005 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 320 | IPR013083 | - | |
Car04g02005 | 322 | CDD | RING-HC_RNF113A_B | 261 | 301 | - | - | |
Car04g02005 | 322 | Pfam | Zinc finger, C3HC4 type (RING finger) | 262 | 304 | - | - | |
Car04g02005 | 322 | SMART | ring_2 | 263 | 300 | IPR001841 | - | |
Car04g02005 | 322 | MobiDBLite | consensus disorder prediction | 1 | 102 | - | - | |
Car04g02005 | 322 | MobiDBLite | consensus disorder prediction | 42 | 82 | - | - | |
Car04g02005 | 322 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 321 | - | - | |
Car04g02005 | 322 | SMART | c3hfinal6 | 185 | 212 | IPR000571 | GO:0046872 | |
Car04g02005 | 322 | PANTHER | ZINC FINGER PROTEIN 183 | 1 | 321 | IPR039971 | - | |
Car04g02005 | 322 | SUPERFAMILY | RING/U-box | 262 | 306 | - | - | |
Car04g02005 | 322 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Car04g02005 | 322 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 186 | 211 | IPR000571 | GO:0046872 | |
Car04g02005 | 322 | Gene3D | - | 183 | 217 | - | - | |
Car04g02005 | 322 | ProSiteProfiles | Zinc finger RING-type profile. | 263 | 301 | IPR001841 | - | |
Car04g02005 | 322 | ProSiteProfiles | Zinc finger C3H1-type profile. | 185 | 213 | IPR000571 | GO:0046872 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3419 | PF13920 | zf-C3HC4_3 | 5.50E-09 | CL0229 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g02005 | K13127 | - | csv:101221334 | 592.808 |