Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02006 ATGGCCGAAGAAGATGATAAGAGATTGAAGAAAAGGAAGAAGAAGAGGTTGATAGGCGCCGACAGGAGGAAGCGTCTCGTTCGTCTCAAATGCTGTGTGCAAAACTACGATTGGGGGGTTCTAGGGTGTAATTCACAAGTTGCGAGGATGTTTTTGCTCAATTCGGGCTCCTACACTGCCGATCCGGATGATTGTTACGCGGAGTTCTGGATTGGAACGCATAAATCGGGTCCTTCTTTCGTTTTTTTTGGACGGGACTATAATGCCGCTGCAATTGGATCTAAACCCTTGAGTCTCAAGGACTGGATCACGGTCGATCCGGGTGCTGTGCTTGGTGATAAGGTTGCGCGGAAATGGGGAGGCGATCTCCCCTTCCTCTTCAAGGTGCTGTCGGTAGAGAAGGCTTTATCCATTCAGGCTCATCCGGATAAAGAGTTAGCGAGGGCTTTGCACGAAGCTCAACCGAGCATCTATAAAGATGACAATCACAAGCCAGAAATGGCTTTAGCATTGACTGGGTTTGAGGCTCTCTGTGGGTTCATCAGTTCTAAGGAGCTCAAGGGGGTGCTGAGTAGCGTTCCTGAGATAGTAGAATTAGTCCAAGGTGCAGATGCAGAGAAGTTCTCACACGATAGTGAGCAAAATGGGAAGGAGAAAGTGAAATCACTTTTTGAGTCCATATTTAGTCAGATCATGTCATCTAACAAGGCCATGGTTCGTGAGGCTATATGTAAACTAAAAAGGCGCCTTAGTTTGGAGAAAAAGAAGAGGCAACTGTCTGCGAAAGAACAATTGGTTCTCAGACTAGAAGCTCAATATCCTGCTGATGTCGGTATACTAGCAGCATTTTTTCTAAACTATGTGAAGTTAAAACCAGGCGAAGCGTTATATCTTGGTCCGAATGAACCCCATGCATATATATCTGGGGAATGCATCGAATGTATGGCAACCTCTGACAATGTTGTTCGTGCCGGCCTTACCTCTAAAAAAAGAGACGTTCAAGCGCTTCTTTCAATGCTCAACTACAAACAGGGGTTTCCCGAAATTTTGCAAGGAGTTTCGTTGAATGAATACACACGAAAGTACGCCCCTCCGTTCGATGAATTTGAAGTTGATCGCTGTATTCTTCCAGTAGCTGCATCTGTGTCCTTCCCCTCTGTCCCAGGACCATCTCTGTTTCTGTTAATGTCTGGAAAAGGGACAATTATGACAGGCTATTCTGAAGAGATTACTTTTCAAGAGGGTGAGGTTCTGTTTGTTCCAGCATATATGGAGGTCAGTGTAACAGCTGCAGCTACAGAATTACATATGTACAGGGCTGGGGTCAACAACAGATTCTTTAAAGACTTGTGA 1353 45.31 MAEEDDKRLKKRKKKRLIGADRRKRLVRLKCCVQNYDWGVLGCNSQVARMFLLNSGSYTADPDDCYAEFWIGTHKSGPSFVFFGRDYNAAAIGSKPLSLKDWITVDPGAVLGDKVARKWGGDLPFLFKVLSVEKALSIQAHPDKELARALHEAQPSIYKDDNHKPEMALALTGFEALCGFISSKELKGVLSSVPEIVELVQGADAEKFSHDSEQNGKEKVKSLFESIFSQIMSSNKAMVREAICKLKRRLSLEKKKRQLSAKEQLVLRLEAQYPADVGILAAFFLNYVKLKPGEALYLGPNEPHAYISGECIECMATSDNVVRAGLTSKKRDVQALLSMLNYKQGFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIMTGYSEEITFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFKDL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15691950 15695813 - Carg28089-RA Car04g02006 147431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02006 450 Coils Coil 252 272 - -
Car04g02006 450 ProSitePatterns Phosphomannose isomerase type I signature 1. 158 166 IPR018050 GO:0004476
Car04g02006 450 Pfam Phosphomannose isomerase type I, catalytic domain 26 180 IPR046457 -
Car04g02006 450 Pfam Phosphomannose isomerase type I, helical insertion domain 208 285 IPR046458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02006 K01809 manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8] - csv:101220595 777.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02006 Car15g00860 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00346 Car-Chr1:1981058 Car04g02006 Car-Chr4:15691950 5.83E-176 dispersed
Car04g02006 Car-Chr4:15691950 Car14g00751 Car-Chr14:4198188 0 dispersed
Car15g00860 Car-Chr15:5026030 Car04g02006 Car-Chr4:15691950 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g329 Blo01g00502 . Bda01g02070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02261 . . . Cmo04g02163 Cmo15g00956 Cma04g02066 Cma15g00917 Car04g02006 Car15g00860 Cpe13g00402 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005332 2 4 2 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 0 1 1 1 3 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02006 Car_Chr04 FPKM 12.245522 14.245158 1.317201 1.292879 4.354958 5.466859 7.226401 0.447975 0.539068 0.494907