Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02015 ATGCTCTGTTTCTCCTTCCAAAATGTGGCTCTGTTTCTCCTTCTTCTATGCTCCTCCTCTCATTGTCTTCTTGTAAGTTCTTTGAATCATGAAGGGTTTATGCTTTTGTCATTTAAGCGCTCCATTTTCGAAGACCCACATGGGGCTTTGACCGATTGGGATTCCTCTGATGAAACCCCTTGTTCTTGGAATGGCGTTGGCTGTATACACCAAATTGTTGTTTCCCTTACGTTTCCTAAGAACAATCTATATGGGTTTCTTCCTTCTTCTCTCGGGGCTCTTTCTGGCCTCCGCCATGTCAATTTCAGGAACAATAGGCTGTTTGGGAGCTTGCCTTCACCGCTCTTTTCCGCTCAACGCCTACAAAGCTTGGTTCTCTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGTAAGCTTAAATTCCTTCAAACTCTGGATTTATCTCAAAATTTCTTTAGTGGCTCCTTACCCACTTCGATTCTTCAATGCAAGAGGCTTAAAACCCTTGATCTTAGTCAGAATAACTTCACTGGTTCACTGCCTCATGGGTTTGGAACTAGCTTGAGTTCTTTGGAGAAACTTGATCTTTCATTCAACAGCTTTGATGGTTCTGTTCCTAATGATTTGGGGAATTTGGGTAGCTTACAAGGAACTCTTGACTTGTCTCATAATCATTTTTCTGGTTCAATCCCTTCTAGCCTTGGGAACTTACCTGAAAAGGTGTACATTGATCTCAGCCACAACAATTTGAATGGTCCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCCACTGCTTTTATTGGGAATCCTGGGCTCTGTGGTTCCCCATTGAAGAACACATGTTCTTCACCATCATTGCTGCCATTTCTCCCAAGGACTTATGGTGAAAACGCTAAGAAGGCTAGTGGATTAAGTAAGAGTGCTGTGATTGCTATAGTACTTGGTGATATGATTGGCATATGTTTAGTTGGGTTATTGATCTCATATTGTTATTCTAAACTGTTCAATCCAAGAAACAGCAGAGAATGTTTATGTTTCAGGAAGGATGAATCCGAGACGGTTTCACAGAATGTCGAGCAGCTCGATCTCGTGGCATTGGATGAACAAGTTGAGTTTGATCTTGATGAACTTCTCAAGGCATCAGCATTCATTCTTAGCAAAAGTGGGATTGGGATAATGTATAAAGTGGTGCTCAACAATGGTGTTACGTTGGCCGTGCGTCGATTAGGCGAAGGCGGTTCTCAAAGACTCAAAGAGTTTCGAACAGAAGTAGAAGCCATAGCAAAGCTAAGACATCCTAATCTTGTCACTCTTAGAGCCTATTACTGTTCATCTTCCAACACTAGAACCTATTATCAAGCTCCTGAATCACTCAAAGTCTTGAAACCATCTCAAAAATGGGATGTTTACTCATATGGTGTGATCTTACTTGAAATGATCACTGGAAGATTCCCATTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTTCATTGGATCCAACTCTGCATTGAAGAACAAAAGCCAATTTCAGAAGTCATTGATCCATATCTAGTTCGAGATGCAGATAACGAAGAAGAGATTGTCTCGGTACTAAAACTTGCAATGGCTTGTGTTCATGGAATCCCTGAAAGGAGACCTTCCATGAGACACATCTCCGATGTGCTCGAAAGGGTATAG 1698 41.7 MLCFSFQNVALFLLLLCSSSHCLLVSSLNHEGFMLLSFKRSIFEDPHGALTDWDSSDETPCSWNGVGCIHQIVVSLTFPKNNLYGFLPSSLGALSGLRHVNFRNNRLFGSLPSPLFSAQRLQSLVLYGNSFSGSVPNGIGKLKFLQTLDLSQNFFSGSLPTSILQCKRLKTLDLSQNNFTGSLPHGFGTSLSSLEKLDLSFNSFDGSVPNDLGNLGSLQGTLDLSHNHFSGSIPSSLGNLPEKVYIDLSHNNLNGPIPQNGALMNRGPTAFIGNPGLCGSPLKNTCSSPSLLPFLPRTYGENAKKASGLSKSAVIAIVLGDMIGICLVGLLISYCYSKLFNPRNSRECLCFRKDESETVSQNVEQLDLVALDEQVEFDLDELLKASAFILSKSGIGIMYKVVLNNGVTLAVRRLGEGGSQRLKEFRTEVEAIAKLRHPNLVTLRAYYCSSSNTRTYYQAPESLKVLKPSQKWDVYSYGVILLEMITGRFPLIQVSSSSEMDLVHWIQLCIEEQKPISEVIDPYLVRDADNEEEIVSVLKLAMACVHGIPERRPSMRHISDVLERV 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15963145 15965527 + Carg26598-RA Car04g02015 147440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02015 565 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Car04g02015 565 Pfam Protein kinase domain 455 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02015 565 Pfam Leucine rich repeat 168 229 IPR001611 GO:0005515
Car04g02015 565 Pfam Leucine Rich Repeat 145 164 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01544 Car04g02015 CCT
Car04g02015 Car18g00920 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02015 Car-Chr4:15963145 Car18g00653 Car-Chr18:7798146 4.88E-23 dispersed
Car18g00920 Car-Chr18:9971576 Car04g02015 Car-Chr4:15963145 2.90E-49 wgd
Car04g01544 Car-Chr4:8977076 Car04g02015 Car-Chr4:15963145 2.02E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88833 PF00069 Pkinase 2.50E-08 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02015 - - csv:101203259 679.863