Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02028 ATGGCAATTATACCCATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCCGGCTCCTCCCCGTCTCGTCCTCCTTTCGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCAGAGGAAGAAGAAGAGAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTACGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCATGGTCGACAGCCGCCCCTCCCGATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATACGGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA 642 52.34 MAIIPINSSNLDLSISMPGSSPSRPPFVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALATELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYGKGASSASTMPPEAFLSALKLRQPS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16323750 16325746 + Carg27270-RA Car04g02028 147453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02028 213 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Car04g02028 213 Pfam Homeobox associated leucine zipper 117 151 IPR003106 GO:0006355|GO:0043565
Car04g02028 213 Pfam Homeodomain 61 115 IPR001356 GO:0003677
Car04g02028 213 Coils Coil 130 153 - -
Car04g02028 213 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02028 Car15g00884 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02028 Car-Chr4:16323750 Car07g00543 Car-Chr7:2754898 1.48E-48 dispersed
Car04g00045 Car-Chr4:243721 Car04g02028 Car-Chr4:16323750 1.95E-77 transposed
Car15g00884 Car-Chr15:5258409 Car04g02028 Car-Chr4:16323750 1.38E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3421 PF00046 Homeodomain 1.40E-16 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02028 K09338 - csv:101206325 273.863